Silurus meridionalis (southern catfish): 124381437
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Entry
124381437 CDS
T08004
Symbol
clockb
Name
(RefSeq) clock circadian regulator b isoform X1
KO
K02223
circadian locomoter output cycles kaput protein [EC:
2.3.1.48
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124381437 (clockb)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124381437 (clockb)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
124381437 (clockb)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124381437 (clockb)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
124381437 (clockb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_11
PAS_3
HLH
PAS
PAS_9
RNA_pol_Rpb4
CCDC22_CC
bHLH_NCOA
bHLH_NPAS4
bHLH_IRO3
TraF_2
PAS_4
Motif
Other DBs
NCBI-GeneID:
124381437
NCBI-ProteinID:
XP_046699012
LinkDB
All DBs
Position
28:complement(4096296..4112949)
Genome browser
AA seq
788 aa
AA seq
DB search
MSSIDRDDGSIFDELMEGDERDKAKRVSRNKSEKRRRDQFNVLIKELGTLLPANTRRMDK
STILQKSIDYLRKQKEITAQSESSEIRQDWKPPFLSNEEFTQLMLEALDGFFLVILTDGN
VIYVSESVTSLLGHLPSDLVDQNLLNFLPTGEHSDVYKALSSHPEAENLSPEYLKTKGQL
EFCCHMLRGSVEPKDPAMFEYVRFIGNFKSLSNMPRISRNGLEGVLQQSLRPAFDDHVCF
VATVRLTKPQFIKEMCTIEEPNEEFTSRHSLEWKFLLLDHRAPPIIGYLPFEVLGTSGYD
YYHVDDLESLAKCHEHLMQFGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVC
THNVVSYAEVRAEKRREMGIEDSPPERTVDKSQDSGSESQLNTSSLKEVLERFDHSPTPS
TSSHSSRKSSHTAMSDSMCTSTPNESQVEVRTPPRPSTIDMTLQRRSSLSDQNIHTSSPV
QVNQQQQQTQHNTQYSAQLNAMQHLKEQLEQRTQMIEANIKKQQEELRQIHEQLQKVQGQ
NLQMYLQQSSAMHHSQVGGASGSQAEVGVQVVTSTAPNRTHRTLQPQQAPPPQNSQGSVL
TQGSVSNTMMVSQPGGDSVLQVPSTPSHNITQVTTINRFPGQQLVTKLVTAPMACSTVMV
PTTMFMGQVVTAYNPFAQQQPQQQQQGRTQAIAAVTDSQQQGQPQGAILPQQQQPFLQGT
HILQSNQSTQLILQAFPIQQQGAFTTTAPQPPPHQPQQKPQQQLKPQTPKQAKTSSSHHT
DTSSTQSQ
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgagctccatagacagggatgatggcagtatttttgatgagttgatggaaggcgatgag
agggataaggccaaacgcgtttccagaaataaatcagagaagaggaggagagaccagttc
aatgtgctcatcaaagagctgggcaccttgctgcctgccaacacacgcaggatggacaag
tccaccatcttacagaagagcattgactatttacgcaagcaaaaagaaatcactgcacag
tctgagtcgagcgaaatcagacaggattggaagccccctttcctcagcaatgaggagttc
acacaactcatgctggaggcgttggacggcttctttctcgtcatcctgaccgatggaaac
gtcatctatgtgtctgaaagtgtcacgtctttactcggccacttaccgtcagatttagta
gatcagaacctgcttaacttccttccaaccggagagcacagtgatgtgtacaaagccctc
tcctcacacccagaagccgaaaacctcagcccagaatacctcaagactaagggccagctg
gagttttgctgtcacatgcttcgaggctctgtggaacccaaagatccggccatgttcgaa
tacgtcagattcatcggcaacttcaagtctctcagcaacatgccacgaataagccgaaac
ggacttgaaggagtactccagcagtcactgaggccagcctttgacgaccacgtgtgtttt
gtagcaacagtgaggctaaccaagcctcagttcatcaaggagatgtgtaccatagaggag
cctaacgaagagtttacatccagacacagtctagagtggaaatttctgctcttagatcat
agagcccctcctatcattggttatcttccctttgaagttctagggacgtcaggttatgat
tactatcacgttgacgacctggagtccctggctaaatgccacgagcatttgatgcagttt
ggaaagggcaagtcatgttactatcgattcctgaccaaaggccaacagtggatctggctc
cagactcactattacatcacctaccaccagtggaactcacggcctgagtttattgtgtgt
acacacaatgtagtgagctatgcagaggtacgggcagagaaaaggagagagatgggcatc
gaggattcacctcctgagagaacagtagacaagtctcaggactcaggatctgaatcccaa
ttaaacacctccagcctaaaggaggtgctagagcgattcgatcacagccccacaccgtcc
acctcctcgcacagctcgcgcaagtcgtcacacacagccatgtcagacagcatgtgcacc
tccacccccaatgagtcccaggtggaggtgagaacaccgcctcggcccagcaccatcgac
atgacattacagcgccgttcctccctcagtgatcagaatattcacacaagttcccctgtt
caagtaaaccagcagcaacaacaaacccaacataacacacagtactccgcacagctgaac
gccatgcagcatctgaaagagcagttggaacagaggacgcagatgatcgaggccaatata
aaaaagcagcaggaagaactgaggcaaattcacgagcagctgcagaaggtgcagggccaa
aaccttcagatgtacttgcagcagtcatcagctatgcaccactctcaggtgggtggagct
tcaggctcccaagctgaagtgggagtacaggttgtcacaagcaccgcccccaacagaaca
catcgcacccttcagccacagcaagctccgcctcctcagaattcacaaggctccgtcctc
acacagggttctgtgtccaacacaatgatggtcagtcagcctggtggcgacagtgtcctg
caggttccaagcaccccatcgcataacatcacacaagtaactacaattaacaggtttcca
gggcaacagttggtcacgaagttagtcacggctcccatggcctgcagtactgtgatggtt
cccacgacaatgtttatgggccaagtagtgaccgcgtacaacccgtttgcgcagcagcag
ccgcagcagcagcagcagggccgaactcaggcgatagcagcggtgactgattctcagcaa
caggggcagccccagggggcgatactgcctcagcaacagcagccatttttacagggaacc
cacattttgcagagcaaccagtccacacagctgatcctgcaggcattccctattcagcag
cagggtgcattcaccacaacagcaccacaaccaccaccacatcaaccacagcaaaaaccc
cagcagcagttgaagccgcagactccaaagcaggcgaaaacctcatcctctcaccatacg
gacacctcgagcacccagtcacagtga
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integrated database retrieval system
