Silurus meridionalis (southern catfish): 124381467
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Entry
124381467 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo02010
ABC transporters
smeo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124381467
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124381467
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
smeo02000
]
124381467
Transporters [BR:
smeo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124381467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
DUF4162
Motif
Other DBs
NCBI-GeneID:
124381467
NCBI-ProteinID:
XP_046699066
LinkDB
All DBs
Position
28:complement(6415782..6591086)
Genome browser
AA seq
2226 aa
AA seq
DB search
MGLLVQLKLLLWKNFTLRKRQKLRLVIELIWPLFLFFILVWVRSTNHPVYKGQCHYLNKP
MPSAGVLPWLQGMVCNIQNPCVNEPTPGETPGQVNNFNDSIIAKALIEVQSLLADSSLLS
NIKLLSDDINKWTHILENFNTTKGRSIPLRSVLRDNETLSMYLKNNLSVSSTTAQRMMSV
GLRLNQLPGLLLEMDLHSTLCNSSVDRFLEFYSTIQRQEFQNITCSLTPTQLRWTRAAVV
QNLDNRKLMAAIPSALNMNSVDFVALLTSTTFHAAPLSNQVSKLQTTAILNGMNSLDFRS
NPFGSLNLFMCGGSPSSNSSSAKPVFRLPTQATLSLSSNTSQGNSSEFCQNLIDMLTGTP
SLRLFWTSLRPLLQGRILYTPDTPFTRRVMAKANSTFNALAKVGELADTWLENEDKIWNF
FQNSKQINTLRAMLQNPLVSAVLDQQLNGSRLSSALIANFLFNGNEKDRPAGMPAFDWRN
VFNTTSQVAKLIKQVMACFNLDKFEAMASETVLVEHALKLMEQENFWAGVVFTDLDAGSP
SLIRYKIRMDIEETERTDKIKDRSWFPSARDNPFNDLRYVRGGFVYLQDILDHAIIQTFT
GVGKKLGVYMQQIPYPCYVDDAFVMSIATIMPMFLVLAFNYSVCQIIKGLVLEKEMRLKE
VLRVVGVRNGALWLSWFTENIVLLTVPCALISILLKYGKILSYSDPSVIFVFLLVFCIAT
VMQCFFISVFFSRANLAAACGGLIYFLLYLPHVLCYAWRDTMTFRTKLATSLLSCVAFGY
GCENFARYEEQGIGIQWKNIMVSSQDDDPYSFIVSIIMMLIDALFYWILTWYIENVFPGQ
YGIPRPWYFPLTSSYWCGTPAGXDTDLDPLDALEQQNGYLENPPTNLKPGVSIRNLVKVY
STGKKLAVDKLSLDFYQDQITSFLGHNGAGKTTTMSILTGLFAPTSGTAYINGFDIRKDM
DRIRKTLGMCPQHNVLFNELTVEEHIYFYARLKGRSSKDVKQEIDQMIKDVGLPHKRKDL
AKNLSGGMQRKLSVAIAFVGGSDVVILDEPTAGVDPYARRGIWELLLKYKMGRTIILSTH
HMDEADILGDRIAIISHGKVCCCGSSLFLKKTYGSGYYLTLALANQEIMTSQCHTGGKQL
SDASSLDEGISSRSISTMELADVADVTSVIRFHVPEAEFLEVIGQELVYVLPYAGSKDGS
FASLFKELDLEKERLGISSYGISDTSLEEIFLKVAEETGVDMETNEKAEKLQRDWKRSSK
RSTLSSALEHRDGAASKQVKKKARFLNRIEDGQRPTCVNGKGSCVITGWPLLRHQFLALF
IKRFHHARRSRKGIIAQVVLPALFVCLSLIFSLIVPPFVEYPSLELQPWMYGKPQNTFYS
ADRMDVDEAMRVKRALLSEPGFGTRCMDGNPIPKYPCTPSGATDWFTPSVDPYILEILNN
GNWSMRNPSPDCQCSTPQRNIMLPDCPPGAGGLPPPQKTQNTTDTLQDLTGRNMTDFLLK
TYAKSGKIRYGGLSIGAINSQVRLNESEISALISDLKTLFNSSQNNITEKFFHDLEMLLI
ELGTKDNVKVWFYNQGWHAIVSFLNVATNAILRGNLPAGLQPKLHGISAFNHPLNLTKQQ
LSTSVMSSSTDVVVAICVIFAMSFIPASFVLFLIQERVSKAKHLQFVSGVNPTAYWVANF
TWDMCNYVIPCLIVIVIFLCFQQKAYVSPQNLPALVLLLMLYGWAITPMMYPASFIFNVP
STAYVVLTCINLFIGINGSIATFVMEMFNDQNITDINNIVKQVLLIFPHFCLGRGLIDMA
RNQAMATIFISLGEDRFEDPLSWKMVGKNLFAMAIQGVVMFSFTLLIQYKFFCKPRLVTE
LPRSSEEEDEDVAREHERVQRGKAESDLLRICDLTKVYSGKKIPAVDRISVGVPAAECFG
LLGINGAGKTTTFKMLTGDIRPSGGEAFISGYSIRTEMSQVHQNMGYCPQFDGIDDLLTG
REHLEFYARLRGVPEREVTMVAEWGIQKLGLVKYSNKSAGTYSGGNKRKLSTAMALIGCP
PVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRMAIMVNGQFK
CLGSIQHLKSRFGDGYTVIVRVRGGLADLSAVEQFVTLTFPGSVLKEKHHNTLQYQMPHN
DGALSHIFSMFSRNQDTLGVEDYSVSQTTLDQVFVNFARQQHDAEEGVYENPVDLSDEIP
MHKHTH
NT seq
6681 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctggtgcagctcaagcttctgctctggaagaacttcactttgcgcaagagg
cagaagttgcggttggtaattgagctaatatggcctctgttcctgtttttcattctggtg
tgggtgagatctaccaatcatcctgtctacaaaggccagtgccattatcttaacaagccg
atgccatcagctggggtgttgccatggttacaaggcatggtctgcaacatccagaatcca
tgtgtcaatgagccgacgcctggagaaacccctggacaggtcaacaacttcaacgactcc
atcattgcaaaggctttgatcgaggttcagtctctcttagccgactcctcgctgctgtct
aacatcaagcttctttctgatgatatcaacaaatggactcatatccttgagaatttcaac
acaaccaaaggtcgctcaattcctttgcgcagtgtgttaagagataatgagacactctct
atgtacctgaagaacaacctgtcagtatcaagtacaactgcccagaggatgatgagcgtg
ggactccgactcaatcagttacctggtcttttactggagatggacttgcactccaccctc
tgtaactcctctgttgaccgctttttggagttttactcaacaattcaaagacaggagttc
cagaacatcacatgctccctgacacccactcagcttcgctggacgagagcagctgttgtg
caaaatctggacaacagaaagctcatggcagctattccgtcagcactcaatatgaactct
gtagatttcgtcgctctgctcaccagcaccaccttccatgcggcccctttgtcaaatcag
gtgtccaaactgcagaccacagcaatcctgaatggcatgaactctctagacttccgctct
aaccccttcggcagcttgaatctgttcatgtgtggtgggagtccaagctccaatagcagc
agtgcaaaaccagtctttcgattgccaacacaagccacactttcactaagctcaaacaca
tcccaaggcaactcaagtgaattctgtcagaatttgattgacatgctgacaggaactccc
tccttgcgtcttttctggactagtctccgcccactccttcagggacgcatcctctacact
ccggacacgccctttacgcggagggttatggcaaaggccaatagcaccttcaatgctctg
gctaaagtcggcgaactggcagacacttggctggaaaatgaggataagatctggaacttt
ttccagaacagcaagcagatcaacacgctccgggccatgctgcagaacccacttgtttcg
gcagttctggatcagcagctgaacgggagcagattgtcttcagcgcttatcgcgaatttt
ctgttcaacggtaatgaaaaagaccggcctgcagggatgccggcatttgactggagaaac
gtcttcaacaccaccagtcaggttgcaaaactcatcaagcaggtcatggcgtgcttcaat
ctggacaagtttgaggctatggctagtgaaacagtgttggtggaacatgccctcaagctg
atggagcaggagaacttttgggctggagtagtttttacagacctggatgcaggcagccca
tcactcatcagatataagatccgcatggacatagaggaaactgagaggacggacaagatt
aaagacaggtcctggtttccatcagctcgtgataacccctttaacgatctgcgctatgtg
agaggaggctttgtgtatctgcaagacattctggaccatgctatcatccagacattcaca
ggtgttgggaaaaaactgggggtctatatgcagcaaataccctatccatgctatgtagat
gacgcctttgtgatgtccatcgccactatcatgcctatgttcctggtgctggccttcaat
tactcggtgtgccagatcatcaaaggtctggttctagagaaggagatgcggctcaaggag
gtactccgagtggtgggcgtgagaaatggagcactctggctctcctggtttacggagaac
attgtcctgctaacggtgccttgcgcattgattagcatattactgaagtacggcaagatc
ctcagttatagtgacccatctgtgatcttcgtcttcctgctggtgttctgcatagccaca
gtcatgcagtgcttcttcatcagcgtctttttctcaagagcaaatctggcggccgcctgt
ggtggacttatctacttcctcctctacctgccccatgtgctctgttacgcctggagagac
accatgaccttccgaaccaagctcgccacgagcctcctatcatgtgtggcatttggttat
ggctgtgagaattttgcccgatatgaggagcaaggtattggcattcagtggaaaaacatc
atggtcagctctcaggatgatgacccctacagcttcattgtctctatcatcatgatgctg
attgacgctctgttctattggatactcacctggtacatcgagaacgtcttcccagggcag
tatggaattcctagaccatggtatttcccattaacctcttcatactggtgtgggacacca
gctggtngtgacacagacttggatcctcttgatgcactagagcagcagaatgggtacctg
gaaaatcctcccactaacctaaagccgggagtgtctataagaaaccttgtgaaggtgtat
tcgactggaaagaaacttgctgtagacaaactcagtctggacttctaccaggaccagatc
acatcattcttaggacacaatggtgcaggaaaaaccaccactatgtccattttgaccggc
ttgttcgccccgacctctggcacggcttacattaacggctttgacattcgcaaggacatg
gaccgcattcgcaagactctgggcatgtgcccacaacacaacgtcttatttaatgaactt
actgtggaggagcacatttatttctatgcccgtctcaaggggaggagctccaaggatgtc
aaacaggaaatagatcaaatgatcaaagacgtcgggctgccgcataagcgcaaagatctc
gctaagaacctttcaggtgggatgcagaggaagttgtcagttgctatagcgtttgtgggc
gggtccgacgtggtgattctggatgagccgacagcgggagtggatccgtatgccaggagg
ggaatctgggaactgctgctaaaatataaaatgggtcgcaccatcattctgtccacgcac
cacatggacgaggcggacattttaggcgatcgcatcgccatcatctcccatggcaaggtc
tgttgctgcggttcctccctcttcctgaagaagacctatggcagcgggtattacctcact
ctcgcattggccaatcaggagataatgacatcacaatgccacacaggtggcaaacagctc
agtgatgcttccagtttagatgaagggatcagttcgagaagcatcagcaccatggagctg
gcagatgtagcagatgtcacttctgtcatacgctttcacgtcccggaggcggagttccta
gaggtgatcggtcaggagctggtgtatgtgctgccatatgccggctcaaaagatggcagc
tttgcctcacttttcaaagagcttgatttggaaaaagagcggctgggcatcagtagctac
ggaatctccgacactagcttagaggagatatttctgaaagtggcggaagagacgggcgtg
gacatggagaccaatgaaaaggcagagaagcttcagagagactggaagagaagctctaaa
cgtagcaccttaagttcagccctggagcacagagacggtgcagcttctaaacaagtaaaa
aagaaagccaggttcttaaatcggattgaagatggtcagcggcctacatgcgtgaatggc
aagggttcatgtgttatcaccggttggcctctgctcagacatcagttcctggcattgttt
ataaagcgatttcaccatgcaaggagaagcagaaaaggaatcattgctcaggtggtcctc
ccagcgctgtttgtgtgtctgtctctgattttctctttgattgtcccaccctttgttgag
taccccagtctggaactgcaaccctggatgtatggaaaaccacagaacactttctacagt
gctgacaggatggatgtggacgaggcaatgagggtaaaacgtgctctcctttctgaacca
ggctttggcacccgctgtatggatggcaacccaatacctaaatatccatgcaccccttct
ggagcgacagactggtttactccttcggtagacccgtatatcctggagatcttaaataac
ggaaattggagtatgcggaatccatctccggattgccagtgcagcactccccagcgcaac
atcatgctgccagactgccctcctggtgcgggaggtttaccaccacctcagaaaacacag
aatactacagacaccctgcaggacctcacaggtcgaaatatgactgatttcttgctcaag
acctatgcgaagtctggaaaaatacggtatggaggtctctcaatcggcgcaatcaactct
caggtcagactcaatgaatccgagatctctgcacttatttcagacctcaagactctcttc
aactcatcccagaacaacataacggaaaagttcttccacgacttagagatgttactgata
gagttgggaacgaaggacaatgtaaaagtgtggttctataaccagggatggcatgctata
gtttcgttcctgaatgtggccactaatgccatcctcagaggaaaccttccagccggattg
cagcccaaactgcatggcatctcagcgttcaatcatccactcaacctcaccaaacagcaa
ctgagcacctcggtgatgtcgagctccacagatgtggtggtggcgatctgcgtgatcttt
gccatgtcctttatcccagccagctttgtcctctttctcattcaagagcgtgtcagcaaa
gctaaacacctgcagtttgtcagtggagtcaatcctactgcttactgggtggccaacttt
acctgggacatgtgtaattatgtcatcccatgtcttatcgtcatcgtcatctttctctgc
ttccaacaaaaagcctatgtttcacctcagaacctgcccgcacttgttctgctgttgatg
ctgtacgggtgggcgatcacaccgatgatgtacccagcctcgtttatattcaacgttccg
agcacagcgtatgtggttctcacctgcattaatctcttcattggcatcaatggcagcatt
gccaccttcgtcatggagatgttcaatgatcagaacattactgatatcaataacatagtc
aagcaagtgctgttgatcttccctcacttctgtctgggtcggggcctcattgacatggcc
agaaaccaggccatggcaacaatcttcatcagtctgggagaggataggtttgaagatcct
ctgagctggaaaatggtgggaaagaatttatttgcaatggcaatacaaggtgtagtcatg
tttagcttcacactcctcatccaatacaagtttttctgtaaacccaggcttgtcactgag
ttgccaagatcttcagaagaagaggatgaagacgtggctcgagagcatgagcgagtgcag
agaggcaaagcagagagtgatctactcaggatttgtgacctcaccaaggtgtactcgggt
aagaagattccagcagtggacaggatatctgtgggtgttccagctgctgagtgcttcggc
ctcctggggataaacggggcaggaaaaaccacaacttttaaaatgctgactggagacatt
cggccctcgggtggagaagccttcatcagtggatacagcattcgtactgagatgagccag
gttcatcagaacatgggttattgtcctcagtttgatggcattgatgacctcctaactgga
cgagagcatctggagttctacgcacgccttaggggggtgccagagcgggaggtcaccatg
gtagcagaatgggggatacagaaactgggtctggtgaaatactccaacaaatctgcaggt
acctacagcggagggaacaaacgcaagctgtctacagccatggcactgattggctgccct
cctgttgtctttctggatgagccgaccacagggatggatcctaaagctcgccgtttcctg
tgggactgcatcctcagtgtgatcaaagagggtcgttcagtaatactcacctcacacagt
atggaggagtgtgaggctctatgcactcggatggccatcatggtcaatggccagtttaag
tgcctaggaagcatccagcatctaaagagcaggtttggagatggttacacagtaattgta
cgtgtcaggggcggtctggctgacctgagcgccgtcgagcagtttgtaactctgaccttc
cctggtagcgtgctgaaagagaaacaccacaacacactccagtaccagatgccccacaac
gatggtgctctgtcacatatctttagcatgtttagcagaaaccaggatacactgggagta
gaggactactcagtctcacaaaccactctggatcaggtgtttgtgaattttgcaagacag
cagcacgatgctgaagaaggtgtgtacgagaatcctgtagatctgagtgatgaaatacca
atgcataaacacacacactga
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integrated database retrieval system
