Silurus meridionalis (southern catfish): 124381558
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Entry
124381558 CDS
T08004
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124381558 (rfc1)
03410 Base excision repair
124381558 (rfc1)
03420 Nucleotide excision repair
124381558 (rfc1)
03430 Mismatch repair
124381558 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124381558 (rfc1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124381558 (rfc1)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124381558 (rfc1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124381558 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
Rad17
AAA_5
AAA_33
AAA_16
AAA_7
RNA_helicase
AAA_30
nSTAND3
AAA_14
BRCT_2
AAA_17
AAA_19
NTPase_1
AAA_28
Motif
Other DBs
NCBI-GeneID:
124381558
NCBI-ProteinID:
XP_046699262
LinkDB
All DBs
Position
28:10884917..10915006
Genome browser
AA seq
1125 aa
AA seq
DB search
MDIRRFFAPKPGTAGGSSSTDDEPKNKKKPASKTTSSKLEEKRSAKRKKRVITDSDEEEE
EKKGKKSPEKEKPAASAKKDPVTYVSDSDSDEDFLSLKKSSKLKENGCSKDKKGLNPKAT
KPKQVKSPPAKSPSTKGEEKKSALSPTPPKPAAPKHTPTSVLDYFGNSTAKRSDKKLVAS
TSTKRKATTQDDEETHDDAAIAKQLQMDEDMELEKQIHEDEEFARTLAMFDKAPVPKKAR
MDSQSPSPGTSGAETKPALEQPSTKKSTVKASSKLALMKKKADEEEERQKEEKKSKTISP
KKELTTQASSETAATPKSGVTAGTGKRISTPKSGGGSSKTSPTKPETSPEDSEKKRGNTA
AYRNYLNREGPRALGSKEIPQGEENCLEGCVFVLTGVLESLERDDAKSLIERYGGKVTGN
VSRKTTYLVLGRDSGASKTEKAQSFGTKILNEDELLELIRTKPGKKSKYEIAAEAESKAT
KSRTPDSKGKHTPPACKVTRQKTPTGKSSPSPGKSRSSSSSTRRTSRASHQGSSNEVRKT
LEFGAGKSAAPVAEDEGNSLLWVDKYRPRSLKNLIGQQGEQSCANKLLRWLKNWHKSHSS
NAKPTAARFGKSGGKDDGSAFKAALLSGPPGIGKTTTAALVCEELGYSYVEMNASCTRSK
NSLKEVIAESLNNTSIMNFYTGASQTVSDKHVLIMDEVDGMAGNEDRGGIQEMIGLIKNS
KIPIICMCNDRNHMKIRSLANYCFDLRFQRPRVEQIKGAMMSIAFKEGLKIPPPALNEVI
LASNQDIRQVLHNLSMWSATDKVMTYDQTKADAQKAKKDMKMGPFDVCRKVFVTGEETAH
MSLIDKSDLFFHDYSLAPLFVQENYIHVRPAAAGGNMKNHLVLLSKTADSICDGDLVDRQ
IRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSTGKHSRIVQELSSHMS
LKTLSSKGAINLDYLPYMRTALLQPLQCHGAEGASQSVKLIDDYDIIKEDFDSIMEISTW
GGQPDPYSKLDSKVKAAFTRAYNKKSHLTPYSLQVVKKGRKGAVDADLALDTDIDLQGQD
EEEEEEGTVNSDAMIKQKKAKPAKEVKQEKAGTSGKGKGKGKGKK
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggacatacgcagattctttgcaccaaagcccggcactgcgggtggcagcagcagcacc
gacgacgagccaaagaataaaaagaaaccggctagcaagactacaagctccaaattagag
gaaaagcgatcagccaaacggaagaagagggtcatcactgactcggatgaggaggaagaa
gagaagaaaggaaagaaaagccctgaaaaggagaagcctgctgcatctgcgaagaaagat
cctgtgacttatgtgtctgattcagattcggacgaagactttctgtcactgaaaaagtcc
tcaaagcttaaagagaatggctgtagcaaagacaagaagggcttgaatccaaaagcgacc
aaaccaaagcaggtaaaatcaccacctgctaaatctccgagcacgaagggggaagagaag
aagagcgccctcagcccgactccgccgaagccggccgcgcccaaacacacccccacctcc
gtgctcgattacttcgggaactctacggccaagaggtccgataaaaagctggtggccagt
acgagcaccaagaggaaagcaactacacaagatgatgaggaaactcacgatgacgcggcc
atcgccaaacagttacagatggacgaggacatggagttggagaagcagatccatgaagat
gaggagtttgctcgaaccctggccatgtttgacaaggcccctgtgcctaaaaaggcccgc
atggactcgcaatcaccctcacctggaacaagtggtgcagaaaccaagcctgcgctggaa
cagccatcaacgaagaagagtactgtaaaagccagttccaaactggctctgatgaagaag
aaagctgacgaagaggaggaacggcagaaggaggaaaagaaaagcaaaactatctccccg
aagaaagagctgaccacacaagcgtcttcggagacagcagccacacccaaatcaggtgtt
actgcaggcactgggaaacgaatttccactcccaagagtggagggggaagtagcaagacc
tctcctacaaaaccagagaccagcccagaggactctgagaagaagcgtggaaataccgca
gcatatcgaaactacctgaaccgagaaggaccacgtgctttggggtctaaggagatccca
cagggtgaagagaactgccttgagggctgtgtgtttgtgttaacgggtgttttggagtct
ttggagcgggacgatgcaaagtcattaatagaacgttatggtgggaaagtcacaggaaat
gtcagccggaaaaccacctacctggttctgggacgagacagtggcgcctccaagactgag
aaggcacaaagttttggcaccaagatcctaaacgaggacgagttactggaactgatccga
accaaaccgggcaaaaagtcgaaatacgagatcgctgcagaagccgagagtaaagccacc
aaatcaaggactccagactctaaaggcaaacacacccctccagcatgcaaagtcacacgc
caaaaaacccccacaggcaagagcagtccctcgccagggaaatctcggtcatcctcctcg
tctactcgtagaacttccagggcttcccatcaaggctcttcgaacgaggttagaaagact
ctggaatttggtgcaggaaaaagcgcagcacctgtggcagaggatgaaggcaacagcttg
ttatgggtagacaagtaccgccctcgcagcctgaagaatctaattgggcagcagggtgag
cagagctgtgccaataagttactgagatggctgaagaactggcataaatctcacagcagc
aacgcaaaaccaacagctgctcgatttgggaagtccggaggtaaggacgatgggtctgcg
tttaaagctgctttgctatctggacctcctggtattgggaagaccaccaccgctgctctc
gtgtgcgaggagttgggttacagttacgtggagatgaacgccagctgcacccgcagcaag
aacagtctgaaagaagtaatcgcagagtctctcaataacacaagtattatgaatttctac
acaggtgcgtctcagacggtcagcgataaacatgttctgataatggacgaggttgatggc
atggcaggaaatgaggacagaggaggaatacaggagatgattggtctgataaaaaattca
aaaatccccatcatttgcatgtgcaacgaccgcaaccacatgaagatccgctcgctcgct
aactactgcttcgacctgcgtttccagcgacctcgtgtggagcagataaagggggcaatg
atgtccatcgcttttaaagaaggtttaaaaatcccgccaccggccctcaatgaagtcatc
ctggcatccaatcaggacattcgacaggtgctgcataatttgagtatgtggtcagccaca
gacaaggtcatgacctacgaccagacaaaagcagacgcccaaaaggccaagaaggacatg
aaaatgggaccgtttgacgtgtgcaggaaagtgtttgttacaggtgaagagaccgcccac
atgtcactgatcgacaagtcggaccttttctttcacgattactccctggcaccgctgttc
gtccaagagaactacatccacgtccggccggctgctgcagggggaaatatgaagaatcat
ttagtgctgctgagcaaaactgcagacagcatctgcgacggagatttagtggaccgacag
atccgctctcgccagacctggtctctgctgcccacgcaggcaatctacgccagtgtgctg
ccaggggaattaatgcgtggttatatgagtcagtttcccacgtttcccagctggctgggg
aagttctcatccacaggcaaacacagtcgcattgttcaggagctgtcctcacacatgagt
ctgaaaacattgagcagtaagggggcaataaatctagactacctgccctacatgcgtacc
gccctgctgcagcctctgcagtgtcatggagcagaaggagccagtcagagcgtcaagctt
atagatgactatgacatcatcaaagaggattttgacagcatcatggagatcagtacatgg
ggtggacaacctgatccgtactccaagcttgactccaaggtgaaagctgcattcacacgg
gcttataacaagaagtcccacttgacgccgtactcactgcaggtagtgaagaaaggtcgc
aaaggagcggtcgacgccgatctggctttagacaccgacattgacctccaggggcaggac
gaggaggaggaggaagagggaactgttaatagtgatgccatgatcaagcaaaagaaggcg
aaacctgcaaaagaggtcaagcaggagaaagcaggcacttctggaaagggcaaaggcaaa
ggaaaaggcaagaagtaa
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integrated database retrieval system
