Silurus meridionalis (southern catfish): 124381686
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Entry
124381686 CDS
T08004
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124381686 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124381686 (fip1l1b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124381686 (fip1l1b)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
124381686
NCBI-ProteinID:
XP_046699460
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Position
28:1052302..1058577
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AA seq
575 aa
AA seq
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MSAEEAEKTAAAAVAAAAAVVVAEAPAGDEEEEWLYGDEGENKETEEEEEAKLTAAVSTP
SAPAAAPEENSNGNGMASQEEAQGDNEDSESDSDDDDDDVRVTIGDIKTGAPQYTTYGAA
PVNLNIKTGSRPYVGAKVKGVDLDAPGSINGVPVLEVDVESFEEKPWRKPGADLSDYFNY
GFNEESWKAYCEKQKRLRMGLDSINISSATSKISVCPNVPSSPIPVQQGRTGNDKEAALP
AHVPKPDFTTPSNLYKPGLNPSRISPPQWAGPASQDTPYYTKPTGTIDVIGGQTATISRV
EGRRRHNLEGNNIQVISEHTTPEAEATPAKLPAFFPPGPLPPNMPPPPFLPPPPVSQAPP
LIPPPRLPITVPPPGFPPPPSGPPPSLMPTLDNSGHPGGYDCRPVTPYSFPPGAYPPPMQ
GPVNNWPGMIDNSKQWDYYPRREKEREKERERERTRERGHDREREREREREHSPSTIAYN
SDEERYRYRDYGDRGYERHRERSSREKEERHRERRHREKEEGRHKSSRSSSRRRHDSEEG
DGHRRHKHKKSKRSKEGKEPSEERAADQENQDAME
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaggaagcggagaaaacagcagcagcggcggtggcggcggcagcagcggtg
gtggtggcggaggctcctgccggggatgaggaggaggaatggctgtacggcgatgaagga
gaaaacaaggagaccgaggaggaagaagaagcgaaacttacagctgctgtcagcaccccc
tctgcacctgctgctgcacccgaggagaacagcaatgggaatggaatggccagtcaggag
gaggcgcagggggacaatgaggacagcgagagtgacagcgatgatgacgacgatgacgtc
cgcgttaccatcggtgacatcaagacgggtgctcctcagtacacaacgtacggagcagcg
ccggtgaatctgaacataaagaccggcagcagaccatacgtgggagcaaaggtgaaaggt
gtggatctcgatgccccaggcagcatcaacggcgtcccagttctggaggtggacgtggag
tcctttgaggaaaagccctggagaaaacctggtgctgatttgtcggattactttaattac
ggctttaacgaggaaagttggaaggcgtactgtgagaagcagaagcggctgcgtatgggc
ctcgactccatcaacatcagctctgctaccagcaagatttctgtatgtccaaatgtcccc
tcatcacccatcccggtgcagcagggcaggacagggaatgataaagaggctgcacttcct
gctcacgttcctaaaccagactttaccaccccatctaacctgtacaagcccggcctgaac
ccgtccaggatatcccctccacaatgggcggggcctgcatcccaagacacgccctattat
acgaaacctactgggaccattgacgtgattggtggacaaacagccaccatcagccgggtg
gaggggcgacgccgacacaatctggagggaaacaacatccaggtgatctccgaacacacc
acccccgaagctgaggccacgcccgccaaactcccggccttcttccccccagggcccctc
cctccaaacatgcctccgcctcctttcctgcccccaccccctgttagccaggccccaccc
cttatccctccaccaagactccccatcaccgtccctcctcccggtttcccgcctcctccc
agcggcccgcccccttcacttatgccaacgttagacaacagcgggcatcctgggggatac
gactgccgtcctgtcactccgtactctttccctcccggtgcttacccgccccccatgcag
gggcctgtgaacaactggcctgggatgatagacaactcaaagcagtgggattattacccc
aggcgagagaaggagagagagaaggagagagagagggagaggacgcgggagcgaggacac
gaccgggagagagagagagagcgagaacgagagcatagtccctcgaccattgcctacaac
agtgatgaggagcgctaccgttaccgtgactacggagaccgcggctatgagaggcatcgg
gagcggtcgagcagagagaaagaggagagacatcgtgagaggagacaccgagagaaagag
gagggaaggcacaagtcttcacgcagcagtagcagaagaaggcatgacagtgaggaaggt
gacggccatcgcagacacaaacataagaagtccaagagaagtaaagaaggcaaagagcca
agtgaggagcgagccgccgaccaggagaaccaggacgccatggagtag
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