Silurus meridionalis (southern catfish): 124381969
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Entry
124381969 CDS
T08004
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
smeo03015
mRNA surveillance pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124381969 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
124381969 (ddx39b)
03015 mRNA surveillance pathway
124381969 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124381969 (ddx39b)
03041 Spliceosome [BR:
smeo03041
]
124381969 (ddx39b)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124381969 (ddx39b)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124381969 (ddx39b)
Spliceosome [BR:
smeo03041
]
Complex C
Other components
EJC/TREX
124381969 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124381969 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
124381969
NCBI-ProteinID:
XP_046699936
LinkDB
All DBs
Position
29:complement(8246841..8269295)
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AA seq
445 aa
AA seq
DB search
MRTSRRATRMTENDVDNELLDYEEDEVDATGGVGDRGLVGDGSTVVLRKEGLKGSYVSIH
SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT
LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPAVKVAVFFGGLPVKKDEETLKR
ESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQ
VMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLD
VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILVA
TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLNDV
QDRFEVNISELPEEIDISSYIEQTR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaggacatcaagacgcgcgaccagaatgacggagaacgatgtggacaacgagctgtta
gattacgaggaggatgaggtggacgcgacaggaggtgtcggagacagaggacttgtggga
gacggcagcaccgtggtcttgaggaaagagggacttaaaggatcctatgtttccatccac
tcctcagggttcagggacttcctgctaaaacctgagctcctcagggccatcgtggactgc
ggcttcgagcatccgtcggaggttcagcacgagtgcattccacaagccatcttgggcatg
gatgtgttgtgccaggccaagtcgggaatggggaagacggccgtctttgtcttggcgaca
ctccagcaactggaaccagtgaccggacaggtatcagtgctggtgatgtgtcatactcga
gagctggcattccagatcagcaaagagtacgagcgcttctccaagtacatgcctgctgtc
aaggtggcagtgttctttggcggtttgccggtgaagaaggacgaggagacgctgaagaga
gagagtcctcacatagtggttggaacgcccggccgcatcctggccctgtcacgcaacaag
agtctcaacctgcgccacatcaaacacttcatcctggacgagtgtgacaagatgctggaa
cagcttgatatgcgacgtgacgtccaggagattttccgcatgaccccgcacgagaagcag
gtcatgatgttcagtgccaccttgagcaaagaaatccgtccagtctgccgaaagttcatg
caagatcctatggagatatttgtggatgatgagaccaagctgaccctgcacggcctacag
cagtactacgtcaagctgaaggacaatgagaaaaacaggaaactcttcgatctgctggac
gtgttggaattcaaccaggtggtgatcttcgtgaagtcggtgcagcgctgcatcgctctc
gcacagctactggtggagcagaatttccccgccatcgccatccacagggcaatgcctcag
gaggagaggctcgctcgatatcagcagtttaaagacttccagagacgcatcctcgtggcc
acaaacctgttcggaagaggaatggacatcgaaagggtcaacatcgcctttaactatgac
atgcccgaggattccgacacgtacctacacagggttgccagggcgggcaggttcggcaca
aaaggtctggccatcacgtttgtgtcggacgaaagtgacgcccgaacgctgaacgacgtg
caggacaggttcgaggtgaacatcagcgaactcccagaggagatcgacatctcatcttac
attgagcagacgcggtaa
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