Silurus meridionalis (southern catfish): 124381985
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Entry
124381985 CDS
T08004
Symbol
snx27a
Name
(RefSeq) sorting nexin-27a
KO
K17936
sorting nexin-27
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124381985 (snx27a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
124381985 (snx27a)
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Others
Others
124381985 (snx27a)
Domain-containing proteins not elsewhere classified [BR:
smeo04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
124381985 (snx27a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
PDZ_6
RA
SNX17-27-31_F1_FERM
RA_2
VirE3
SNX17_FERM_C
USP7_C2
PDZ_2
SNX17-31_F2_FERM
YLP
DarA_N
Motif
Other DBs
NCBI-GeneID:
124381985
NCBI-ProteinID:
XP_046699971
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Position
29:complement(3959447..3989784)
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AA seq
557 aa
AA seq
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MADVEEDAAHGAAQCPVTVTATSRHGSVVHTVTTGPRIVRIIKSESGYGFNVRGQVSEGG
QLRSINGELYAPLQHVSAVLPGGAADRAGICKGDRILEVNGVSVEGATHKQVVDLIRTGE
KELVLAVLSVPPQEVDGLDSGEDSSANPNYDYGDKQAVPISIPTYKHVEQHGERFVVYNV
YISGRQLCSKRYREFSILHQNLKREFASYSFPKLPGKWPFSLSDQQLDARRRGLEEYLEK
VCSVKVIGESDIMQEFLSESDENYNGVTDVELRIALPDKTTISVRVRKNGTTEQVYQALV
MKVGMDSIMANYFTLFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLSLRKWLFSLE
EQELLQENPLALHYCFHQAQDDVKKGFIKAEDKAYQLQKLAEQRKMATYLNLLRTCEGYN
EVAFPHCSCDSRRRGHVIAAVSIHHFKLHACTEDGTLENQVIAFEWSEMQRWDTDEEGMA
FCFEYVRGEKKPRWVKIFTPYFNYMHECFERIFYELSWRKEEEEEASDKDNKNCNEYLPP
FEQQKGWHHLGKEIATS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtggaagaagacgcggctcacggcgccgctcagtgcccggtgacggtcacc
gcgacgtctcgacacggctccgttgttcacacggtaacgacgggaccccgcatcgttcgg
attatcaagtcggagtcgggctacgggtttaacgtccgcgggcaggttagcgaaggcggc
cagctgcgcagcattaacggcgagctgtacgctcctctgcagcacgtcagcgccgtgtta
cccgggggggcggcggaccgagccgggatatgtaaaggagaccgaatcctggaggtgaat
ggcgtgagtgtggaaggagcgacacataagcaggtggtggatctgattcgaaccggagag
aaagagctggtgctcgctgttctgtctgtgccaccacaggaagtagatggtctcgactct
ggagaagacagctcagctaatccgaattatgactacggtgacaagcaggctgtgcccatc
tccatccccacctacaagcatgtggagcagcatggagaaagatttgttgtatataatgtg
tatatatctggcagacagttgtgctcaaagcgctaccgggaattttccatcctgcaccag
aacctgaagagagagtttgcctcttactcgtttcccaaacttccaggaaaatggcctttc
tctctctctgaccagcagctggatgctcgtcggagaggcctggaggaatacttggagaaa
gtgtgttcagtaaaggtgattggagaaagcgacattatgcaagagttcctctctgagtca
gacgagaactataatggtgtaactgatgtggagctgcgaatagcactgccagataaaacc
acgatttcggttcgagtgcgcaaaaacggcacgactgagcaggtctaccaggccctagtg
atgaaggttggcatggacagcatcatggctaattactttacgctttttgaagtgatcaac
cattcctttgttcgtaagttggcccctaatgagttcccccacaagctgtatgtacagaat
tacacgtctgcagttccagggacctgtttgtctctgcgcaagtggctcttcagtttagag
gagcaagagcttcttcaggagaatcctctagctctgcattactgcttccaccaggctcag
gatgatgtaaagaagggcttcatcaaagcagaggataaggcctatcagctccagaagcta
gccgagcagagaaagatggccacgtatctgaatttgctacgcacgtgtgagggctataac
gaagttgcgttccctcactgctcgtgtgattcacggaggagaggtcatgtgatcgctgct
gtcagcattcaccacttcaaactgcacgcttgcaccgaggatggaacgctggagaaccag
gttatagctttcgaatggtccgagatgcagaggtgggacactgatgaggagggaatggct
ttctgcttcgagtatgtacgaggggagaaaaaacctcgctgggtcaaaatcttcactcct
tattttaactacatgcatgaatgctttgagaggattttctatgagctcagctggaggaaa
gaggaggaagaggaggcctcagacaaggacaacaagaattgcaatgaatacctccctcct
ttcgagcagcagaagggatggcaccacctggggaaggaaattgccacatcttaa
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