Silurus meridionalis (southern catfish): 124382063
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Entry
124382063 CDS
T08004
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124382063 (irx1b)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
124382063 (irx1b)
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
124382063
NCBI-ProteinID:
XP_046700112
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Position
29:7939924..7943609
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AA seq
403 aa
AA seq
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MSFPQLGFPQVYGVERASPPRQDGGTESGGGVVAGSPASSAAALAPLLGVYAHPWSAHRY
GAFMPYSSAEAALLNHMGTQYELKENPGAHPAGFTMHTGFYPYGQYQYGDPSRAKSATRE
TTSTLKAWLQEHKKNPYPTKGEKIMLAIVTKMTLTQVSTWFANARRRLKKENKVTWGRSA
DDVEGDGDGCGYDSERDDEDAPNKHEREEEIDLETVDSDEDEEAAARAEPSAQSESAPTS
PDASAAASKDASEKSVSADVSLRPVNSKPKIWSLAETATSPDTNCPKGSSVSTAVTTTHP
AFLPTNGIYTCQIGKLNSWTGGALGPLIGVRSLMGVSPNSHYITSSMVQSESPTHSLSPQ
HNSADREHLQRADSPALPLRPSFPVIHDRSHHETAQRALKTVS
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccctcagctgggcttcccgcaggtgtacggagtggagagagcgtctcccccg
cggcaggacggcggcacggagagcggcggcggcgtagtcgccgggagtcccgcgagctcc
gccgcggcgctcgcgcccttgctcggcgtgtacgcgcatccgtggagcgcgcaccgatac
ggagccttcatgccgtacagcagtgcagaagcggctcttctcaaccacatgggcacccag
tacgagttgaaggagaaccctggtgctcacccagccgggttcacgatgcacaccggtttc
tacccgtacggtcagtaccagtatggagacccgtcgcgtgccaagagcgccacccgggag
accaccagtaccctaaaagcctggctccaggagcacaagaagaacccgtatcccaccaaa
ggcgagaagatcatgctggccatcgtgaccaaaatgaccctgacccaggtgagcacgtgg
ttcgcgaacgcgcgccgccgcctcaagaaggagaacaaggtgacgtgggggcgcagcgcc
gacgacgtggagggcgacggcgacggctgcggctacgacagcgagcgcgacgacgaggac
gcgcccaacaagcacgagcgcgaggaggagatcgacctggagaccgtggacagcgacgag
gacgaggaggcggcggcgcgcgcggagccgagcgcgcaaagcgaaagcgccccgaccagc
ccggatgcgtccgcggccgcgagcaaagacgccagtgagaaaagcgtctcggcggatgtt
tctctcaggcctgtgaactccaaacccaaaatctggtcgctggcggaaacagccacgagt
cccgatactaactgtccgaaggggagcagcgtgtccacagcggtcaccaccacgcacccg
gcttttttacccactaacggaatttacacgtgtcagatcggaaagctgaacagctggacc
ggaggcgctttaggacctctgatcggtgtccgatctttaatgggagtgagtccaaacagc
cattatataacctccagcatggtccagagtgagagtcctacacacagcctcagtccacaa
cacaactcagcagatcgagaacatcttcagagagctgattctccagcacttcctctaagg
ccatcgtttccggtcatccatgacaggtctcaccatgaaacagcacagcgagcgttgaag
accgtttcttga
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