Silurus meridionalis (southern catfish): 124382070
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Entry
124382070 CDS
T08004
Symbol
arid1ab
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124382070 (arid1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124382070 (arid1ab)
03021 Transcription machinery [BR:
smeo03021
]
124382070 (arid1ab)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124382070 (arid1ab)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
ARID
124382070 (arid1ab)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124382070 (arid1ab)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124382070 (arid1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
124382070
NCBI-ProteinID:
XP_046700126
LinkDB
All DBs
Position
29:complement(4679630..4723398)
Genome browser
AA seq
2259 aa
AA seq
DB search
MAAQVAALSASPAVELKKPDTQEDSIPGDVQQETMDNGGSPGQKDLNDGAEVANAPGGGR
RRRGGGGGGGGAVEGGGGGGDPEMKNGDSSSRMNSSTNNNQNDLDASSHPGVAHQHPSVF
PPPPYGCNQHYNRGPFHQHGGQQSPGMAPGNIMEPYPTNSHDPGFPNHYNNSSSNNYGPF
PNRTQYQSQSYGVSSPRTSQPSQAGKPPPQPLQAAGTLMAGSFNNQRYNMSNPQPTPTPT
LNQLLTSPTANRGYQNYPPSDYNSQDGTSKGAGDMSSTNPYGGGHHPPWQQRGHHAPPGS
PGSSSAHALNRNQTPGPMDQVVKIRGQHYGAGNPFSQQGPPPGAQQGPPYPGQGYGSPGP
QRYPMGLQVRTPGAMGGMQYGQQMGYGQQGPGAYGPNQGGGYYGQQNPLTPHGGLQQGSY
PQQHSTGPGSQHPYSQPSSGPPLSQGGPPYSQQPQGQSSYLQSPHSQAGQTPYPQSQALS
QSQGTPQSAQVPQQQSGFSQTPPGSGQQPPPPSQQQQSATPQQQPNVGPPQQSQQPMGHG
PPPAQGHQPSPYSQTPPTQPQPQQTPFQRFPTPQQELSQDSFSSHTSGPTSNQPIVSSKS
GTEDSMQGRPSSLPDLGSIDDLPTGTDGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSP
HMPGIRGPSPSPVGSPASATPSRSGPLSPAGSQMPPRPSSVQSDGILHSSINQSAVGQER
VYMRNTQMPVYGSPQPASALSPRPQSGGQVHAGMGHYPQNNSMGSYGPHGGQYVSQGYPR
QPGYGGIPGPNYAGGPSMGNPINPMSGQGGGGAYSGMPPGRMGSRPYGPGMSPNMGAIPP
QVASGMCPPPGMNRKAQDPPSAGMHHGPLNSIHRPPGYPGMNQGMMGAGSPYAPPVNSIH
GMMNQAGPYPMGGNMANNSAGIAPSPEFGMDKINQNQKMNNKVDGTPKTESKKKSNSSTT
TNEKITRLYELGTEPDRKMWVDRYLAFAEEKAMGLTNLPAVGRKPLDLFRLYVSVKEIGG
LTQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIFNNDTK
KNQAKVQPPSPAGSGSLQGPQTPQSTSSSMTEGNDLKPPTPASTPHSQMPPMPGVRSSVS
VQDPFADNGDPAFARRSSVTPNSSFQPGMGGPPDIISRLGQYEPNKDPFGGMRKAGEQFM
NPGQGHSSGLNEQYNRGPPGHIGNMQLGHRQQYGPYGPGYDRRQEPGLSPDGSVGHGAPQ
PNTTSSGADTGMYSPNPQQQRHDSYVNQYPGQSAPPSGQYQNQQPGIYPQQPNFTQKRPG
DGGYGPPAKRHEGEMYPFSGQQQQGPQPSGGTQPQQDMYNQYNAYPGTDRRPPGPQSPFP
FGFGRERGPNAVGTNTQSSIVPPMMGSPLPSVPDGPQGPMWQGRNDMNYSNYPNRQGPPG
APSQGPGYHAMSRSEDMLPSEQRMNHEGPWPGHVNQRQPPYGPSGSGPPVSRTLQSNFQS
SQNHIPQVSSPAPMPRTMENNTSPSKSPYMHSGMKIQKAGPLVPASHVALPPVQPPLVRR
DVAFPPGSVEATQPVLKSRRRLTTKDIGTPEAWRVMMSLKSGLLAESSWALDTISILLYD
DNSISTFSLCQLPGFLELIVEYFRRCLIEIFGILKEYEVGDPGQRTLINPDAVDTDMSDE
EIPEVGQMDDEEDKEENSSQQTSQIQVKHEKAELMHDEISSEKSEEGDEGKTSKDHELST
PYQDSSAVQVKFKQASKFDKLPIKLVWKKDPFVIGRTGKLGRRQTFDSGLIHWSVGGGDT
TEHIQTNFETKMELLKHKHHKQAPVHTEAPPKVDLVTENRNKEESTPHQQNEEHTKSQPP
SGQLLEEKKTAAIVSKAATATSTVNHMLSGCSALVAEESVQNGMENKEEKNKFLFGIDSS
QQVSSIKILEDEPHSKDESPLCTLSDWQDALARRCICVSNIVRSLSFIPGNDIEMSKHPG
LLLILGRVVLLHHRHPERKEAPVTYEKEDEEDEGVSCEQDEWWWDCLEVLRENCLVTLAN
ISGKLDLSIYPESICLPLLDGLLHWAVCPSAEAIDPFPTLGLNGAVSPQRMVLETLSKLS
IQDNNVDLILATPPFSRLEKFYSSLVRLIGDRKVPVCREMAVVLLANLAQGDSLAARAIA
VQKGSIGNLLGFLEDSLAATQFQQSQASLLHMQGSHFEPTSVDMMRRAARALHALAKIEE
NHSEFMLYESRLLDVSVSPLLNSGVSHVICDVLFLIGQS
NT seq
6780 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctgcgctgagcgcgagcccggccgtcgagctgaagaaaccggac
acgcaggaggactcgataccgggagacgtgcagcaggagactatggataacggcggatct
ccgggacagaaagacctcaatgacggcgcggaggtagcgaatgcaccgggaggaggaaga
agaagaagaggtggaggtggtggtggtggtggagcagtagaaggaggaggaggaggagga
gaccctgagatgaaaaacggcgacagttcgtcccggatgaacagcagtactaataacaac
cagaacgacctagacgcgagcagtcacccgggcgttgctcatcagcacccgagcgttttc
cctccaccgccgtacggctgcaaccagcactacaaccggggcccttttcatcaacatggc
ggacaacaaagccctggcatggcaccgggcaatataatggagccttatccgaccaactcg
cacgatcccggcttccccaaccactacaacaacagcagcagcaacaattatgggcctttt
cccaaccggactcagtatcagagccagagttatggcgtgagttcgccgcgcactagtcag
ccgagtcaggcaggaaagcctccgccgcagccccttcaggcagcaggaactcttatggcg
ggttcttttaataatcagaggtataacatgagcaaccctcagccgacccctactccaact
ttaaaccagctcctgacctcacctaccgccaacaggggctaccagaactaccccccgagt
gactataacagtcaggacgggacgagtaaaggagccggcgacatgagcagcactaatccc
tatggagggggtcatcatccgccctggcaacaaaggggccaccacgcgccccccgggagc
cccggaagcagcagcgctcacgcgctcaacaggaatcagacccccggcccaatggaccaa
gtggtgaagatcaggggccagcattatggagcagggaatcctttctctcagcaagggcct
ccaccaggtgctcagcaagggcctccttacccgggccaaggctatggttccccaggacca
cagagatacccaatgggtctgcaggtgcgcacccctggtgctatgggaggtatgcagtat
ggacagcagatgggttatggacagcaaggcccaggagcttatggaccgaaccaaggagga
ggctactatggccagcagaaccctcttactccccatggaggacttcagcagggttcgtac
cctcagcagcattccactggcccaggctcccagcatccatactcccaaccttcatcgggt
cctcctctgtcacagggtgggcctccttactctcagcaaccccagggccagtcttcatac
ctgcagtctccacattcccaggctggccagacaccttacccccaatcccaggctctttct
cagtcacagggaacacctcagtcagctcaggtgcctcagcagcagtccgggttctcccaa
acaccgcctggttctggacagcagccgccacctccttctcaacaacaacagagcgcaact
ccacagcagcagcccaacgtaggacctccccagcaatcccagcagcccatgggtcatggt
cctcctcctgcacagggtcaccagccctcaccctattcccaaacgccaccaacacagcct
cagccacagcagacaccattccagcgcttcccaactccacagcaggagctatcccaagac
tcgttcagttctcacacttctggtcctacctcaaaccagcccattgtctccagtaagagc
ggtacagaggatagcatgcagggacgtccctcaagtctgccggaccttgggtctattgat
gacctgcccactggtacggatggtgcgctgagtccaggtgtcagcacatctggtgtttcg
agtagtcagggcgagcaaagcaacccagctcagtctcctttctccccacacacctcacct
cacatgccgggcatccgtgggccttcaccatcgcctgtgggctcacccgccagtgccacg
ccttctcggtctggacccctttcacctgctggaagccagatgcctcccagaccttccagt
gttcagtctgatggaatcttgcattcttccataaaccagtctgctgtgggccaggagaga
gtctacatgcgcaacacacagatgcctgtttacggctctcctcagcctgcgtctgcctta
tcgccacgcccacaatctggtggccaggtgcatgctgggatgggtcattatcctcaaaac
aactctatgggcagctatgggccacacggagggcagtatgtttctcaaggttatccgaga
cagccaggctatggtggtattcctggtcctaactatgctggaggtccgagcatgggcaac
cctataaatcccatgtcaggacagggaggagggggtgcgtatagcggtatgcctccaggg
cgcatgggttcgaggccatacggtcctggcatgagtcccaacatgggtgcaattccacct
caggtggcttcaggcatgtgccctccacctggcatgaacagaaaagctcaagatccgcca
tcagcaggcatgcaccatggtccattgaactctatacacaggcctcctggttatcccgga
atgaaccagggaatgatgggagctggatctccgtatgcaccacctgtgaacagtatacat
gggatgatgaaccaggcagggccataccccatgggaggcaacatggccaacaactcagca
ggtatagctcccagtccagagtttggcatggataaaatcaaccaaaaccagaagatgaat
aataaagttgatgggactcccaaaacagaatcaaaaaagaagtcaaattcgtctaccact
acaaatgagaaaataacccggctctatgagttgggcactgagccagacaggaagatgtgg
gtggaccgttacctggcatttgctgaggagaaagccatgggcttgaccaacctgccggcg
gtgggccgaaagcctctcgacctctttcgcctctacgtatctgttaaagagattggtggc
cttacacaggtgaataaaaataaaaagtggagggagttggcgacaaacctgaatgttgga
acgtctagtagtgcagctagttcactaaagaagcagtacattcagtgtctgtatgccttc
gaatgcaagatcgagcgcggtgaggacccacctccagagattttcaacaatgacacaaaa
aagaaccaggcgaaggtacagcctccatctccagcgggatctggatctttacagggccct
caaactccacagtcaacaagcagctccatgactgaaggaaatgatcttaaaccccctaca
cctgcatcaacaccccacagccagatgccccctatgcctggtgtgcggagcagtgtaagt
gttcaagatccatttgctgataatggagatcctgcctttgccagaaggagctcagtgacg
cccaattccagctttcagcctggaatgggggggccacctgacataataagtcgtttagga
caatatgaacctaataaggatccttttggtggcatgaggaaagctggtgagcagttcatg
aatccaggacaaggacacagcagtggattgaatgaacagtataacagaggtcctccagga
catattggtaacatgcagttaggtcacagacaacagtacggaccatatggaccaggatat
gaccgaagacaagagcctggtttgagtccagatggcagtgtcggtcatggagcaccacaa
ccaaacactacgtcatctggtgctgacacagggatgtattcacctaatcctcagcagcaa
aggcatgattcttatgttaatcagtaccctggccaaagtgcacctcctagtggacaatac
caaaatcagcagcctggaatctacccgcagcagccgaatttcacacagaagaggccagga
gatggtggttatggtcctccagcaaaacgtcatgaaggtgaaatgtatccatttagtggc
cagcagcaacagggccctcaaccctcaggtggaacccaaccccaacaggacatgtacaac
cagtacaatgcctatcctggcacagatcgacgtccgcctggtccacagagtcctttccct
ttcggttttggaagggagagggggcctaatgctgtaggcacaaacactcagtcctccata
gtgccgccgatgatgggcagccccttgccgtctgttcctgatgggccccaaggtcccatg
tggcaaggcagaaatgacatgaactattccaactatcccaatcgtcagggacctcccgga
gctcccagtcagggtccagggtatcatgcaatgagccgttctgaagacatgttaccttca
gaacagcgaatgaatcatgaaggtccatggccaggtcatgtcaaccagaggcaacctcct
tatggacccagtggttctggcccacctgtgtctagaactctgcagtccaattttcaatcc
tctcaaaatcacattccacaggtatcaagtccagcacccatgccaagaacaatggagaat
aatacatcacctagcaagtccccttatatgcacagtgggatgaagattcagaaagctgga
cctctagtcccagcctcacatgtagccctaccaccagtacagcctccattggtaagaaga
gacgtagcttttcctccagggtctgtggaggcaacccagcctgtactcaaatcgcgccgc
cgactcacgacaaaagatattggcacaccggaagcctggagagtcatgatgtccctcaaa
tcaggattgctagcagagagttcctgggccttggacactatcagtattctactgtatgat
gataatagcatttctaccttcagtctgtgtcagcttcctggcttccttgaattgatagta
gagtacttccgtagatgtctcattgaaatctttggcatcttgaaggaatatgaggttgga
gatcctgggcagcgaacgctgatcaacccggatgctgtcgacaccgatatgtctgatgaa
gaaatcccagaagtagggcaaatggatgacgaagaggacaaagaggagaatagtagccaa
caaacatcacagatccaagtcaagcatgagaaggccgaacttatgcatgatgagatttcc
agtgaaaagtctgaagaaggggacgaaggaaaaacttctaaggaccatgagttatctact
ccctaccaggacagtagtgctgtacaggttaagtttaaacaggctagcaaatttgacaag
cttcccattaagttagtgtggaagaaagacccatttgttattggtcgcaccggcaagttg
ggccggcggcagacttttgacagtgggttaattcattggagtgttggtggaggagacact
acagagcacattcaaactaattttgagaccaagatggagctgctaaaacataaacatcat
aaacaggcacctgtccatacagaggcacctcctaaagtggacctggttactgagaacaga
aataaagaggaaagcacaccacaccagcaaaatgaagagcatacgaagtctcaacctccc
tcaggccaactgttggaggagaagaaaactgcagcgattgtcagtaaagctgctacggct
acgtccactgttaaccatatgctgtctgggtgttcggcattagtagctgaagaatctgtc
cagaacggcatggagaacaaggaggagaagaacaagtttctgtttggaattgactcatca
cagcaggttagcagtattaagatacttgaagacgagccacacagcaaagatgagtcccca
ttgtgcacattgtcagactggcaggatgcactagcacgccggtgcatatgcgtttctaac
attgtccgcagtctctccttcatcccgggcaacgacattgaaatgtccaaacacccaggc
ctgctgcttatactgggccgcgtggttctcctgcaccacaggcatcctgagcggaaggag
gctcctgtcacctatgagaaagaggacgaggaggatgaaggagtcagctgtgagcaagat
gaatggtggtgggactgtctggaagttctgcgagaaaactgtctggtcacgttggcaaac
atctcaggcaagttggacctgtccatatatcctgagagtatctgcctgccactgctggat
ggtcttctccactgggctgtctgcccctcagcagaagccattgacccctttccaacactt
ggacttaatggagcagtttcccctcagagaatggttctggagaccctcagcaagctcagc
atccaggacaacaatgttgaccttattctagccacgccaccctttagtcgcctggagaaa
ttttacagttctctggtacgcttaattggtgaccgtaaggtacctgtatgtcgggagatg
gcagtggtgctgttggctaacctggcccagggtgacagcctggcagctcgggccattgcc
gtacagaaaggtagtatagggaaccttttggggtttctggaggacagtctagcggccaca
cagtttcaacagagtcaggcttcactgttgcatatgcaagggtcacactttgaacccact
agtgtggacatgatgaggcgggctgcccgtgccctgcatgcccttgccaaaatagaggag
aaccactccgagttcatgttgtacgagtcacggcttctggatgtctctgtatcccccctc
ctgaactcgggagtgtcccatgtcatctgtgatgtactgtttctgattggccagtcatga
DBGET
integrated database retrieval system
