Silurus meridionalis (southern catfish): 124382076
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Entry
124382076 CDS
T08004
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124382076 (ddx39ab)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124382076 (ddx39ab)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124382076 (ddx39ab)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124382076
NCBI-ProteinID:
XP_046700136
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Position
29:10634248..10639881
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AA seq
427 aa
AA seq
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MAETDVDNELLDYEEDEEPQGVPESITPIGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVAVFFGGLPIKKDEEVLKKNCPHIVVGTPGRILALVR
NKTLSLKNVKHFVLDECDKMLEHLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaccgacgtcgataatgagctgttggactacgaggaggacgaggagcctcag
ggagtcccggagagcatcactccgatcgggaagaaggaggtgaagggttcctacgtgtcc
atccacagctctggcttcagggacttcctgctgaaaccggagctcctgagggccatcgtg
gactgtggcttcgagcatccgtcagaagtgcagcacgagtgtatcccacaggccatcctg
ggtatggacattctgtgccaggcgaagtccggtatggggaaaacagcggtgtttgttctc
gccacactgcagcagatcgaacctgtagacggacaggtgtcggtgctggtgatgtgtcac
acacgtgagctggccttccaaatcagcaaggagtatgaacgcttctcaaagtacatgcct
acagtgaaagtggccgtgttcttcggcggccttcccataaagaaggatgaggaggtgctg
aagaagaactgcccgcacatcgtggtgggaacaccgggccgcatcctcgccctcgttcgc
aacaaaaccctaagcctcaaaaacgtcaaacacttcgtcctggacgagtgcgacaagatg
ctggagcatctcgatatgaggcgtgacgtgcaggacatcttcagactcacccctcacgag
aaacagtgtatgatgtttagcgccaccctgagtaaggagatccggccggtgtgccgcaag
ttcatgcaggacccgatggaggtgtttgttgacgacgagacgaagctgactctgcacggc
ctgcagcaatactactgcaaactgaaggacagcgagaagaaccgcaagctcttcgacctg
cttgacgtcctcgagttcaaccaggtggtgatcttcgtgaagtcagtgcagcgatgtgtc
gcgctctctcagctgctggtggagcagaacttcccggccatcgccatccaccgaggcatg
gctcaggaggagaggctgtcacgctaccagcagtttaaggacttccagaggaggatcctg
gtagccacaaacctgtttggccgaggaatggacatcgagagggtcaacatcgtcttcaat
tatgacatgcctgaggactctgacacgtacctgcacagggtcgcccgtgccggtcgtttc
ggaactaaaggtctagccgtaaccttcgtgtctgacgagacagacgccaaaactctgaat
gacgtgcaggaccgcttcgaggtcaacgtggccgagttaccagatgagatcgacatctcc
acttacatcgagcagtccagatga
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