KEGG   Silurus meridionalis (southern catfish): 124382169
Entry
124382169         CDS       T08004                                 
Symbol
hdac1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03082  ATP-dependent chromatin remodeling
smeo03083  Polycomb repressive complex
smeo04110  Cell cycle
smeo04330  Notch signaling pathway
smeo04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124382169 (hdac1)
   03083 Polycomb repressive complex
    124382169 (hdac1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    124382169 (hdac1)
   04350 TGF-beta signaling pathway
    124382169 (hdac1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    124382169 (hdac1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:smeo03036]
    124382169 (hdac1)
Enzymes [BR:smeo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124382169 (hdac1)
Chromosome and associated proteins [BR:smeo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124382169 (hdac1)
   HDAC complexes
    Sin3A-HDAC complex
     124382169 (hdac1)
    BRAF-HDAC complex
     124382169 (hdac1)
    REST complex
     124382169 (hdac1)
    SHIP complex
     124382169 (hdac1)
    MiDAC complex
     124382169 (hdac1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124382169 (hdac1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124382169 (hdac1)
  Chromatin remodeling factors
   NuRD complex
    124382169 (hdac1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124382169
NCBI-ProteinID: XP_046700271
LinkDB
Position
29:complement(7070391..7079876)
AA seq 480 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDSTIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEDDPDKRIPIRAHDKRIACDEEF
SDSEDEGQGGRRNAANYKKAKRVKTEEEKDGEEKKDVKEEEKTPEEKMDTKGPKEELKTT
NT seq 1443 nt   +upstreamnt  +downstreamnt
atggcgctgacttcccaaggaacaaagaagaaagtttgctattattatgacggtgatgtt
gggaattattactatggccagggtcatcccatgaagcctcaccgcatccgcatgacccac
aacctcctcctcaactatgggctctataggaagatggagatctacaggcctcataaagcc
aacgctgaagagatgaccaaatatcacagcgacgactacatcaagttcctccgctccatc
cgcccagacaacatgtccgagtacagcaagcaaatgcagagatttaatgtgggtgaagac
tgtcccgtgtttgacggcctgtttgagttctgtcagctttcaactggcggctctgtggcc
ggtgccgtaaaactaaacaagcagcagacagacatcgccattaactgggcaggcggcctt
catcatgccaagaagtcggaggcatctggtttctgctacgtcaatgacatcgtgctggcc
atcctggaactgctcaagtaccatcaaagagttctgtacattgacatcgacatccatcat
ggtgatggagtagaggaggccttctacaccacggaccgtgtcatgaccgtgtctttccat
aagtatggagagtactttcctggcactggtgacctcagagatatcggtgctggaaagggc
aaatattatgctgtgaactacccactcagggatgggattgatgacgagtcttacgaagcc
atattcaaacccatcatggccaaagtgatggagatgtaccagccgagcgctgtagtgcta
cagtgtggtgccgactctctgtcgggggacaggctggggtgcttcaacctcaccatcaaa
ggtcatgcgaagtgtgtcgagtacatgaagagttttaatctgcccttgctcatgctgggt
ggcggaggctacaccatcaggaacgtggctcgttgctggacctacgagacagctgttgcc
ctggacagcactattcctaatgagcttccatataacgattactttgagtatttcgggcct
gacttcaagctccacatcagtccctccaacatgaccaaccagaacacaaacgactaccta
gaaaagatcaagcagcgtctttttgagaatctgcgcatgttgccccacgctcccggcgtg
cagatgcaggcgatcccagaggacgctgtgcaggaggacagcggggacgaggaggatgac
ccagacaaacgcatccccatccgtgcccacgataaacggatagcctgcgacgaagagttc
tccgattccgaggatgaaggacaaggcggccgcagaaacgcagccaactacaagaaggcc
aagagagtgaagaccgaggaggaaaaagatggagaagagaagaaagacgtgaaggaggag
gagaaaaccccagaagagaaaatggatacaaaagggccaaaagaagagctgaaaacaacc
tga

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