Silurus meridionalis (southern catfish): 124382659
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Entry
124382659 CDS
T08004
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124382659 (col18a1a)
00535 Proteoglycans [BR:
smeo00535
]
124382659 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124382659 (col18a1a)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124382659 (col18a1a)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
124382659 (col18a1a)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124382659 (col18a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
124382659
NCBI-ProteinID:
XP_046700691
LinkDB
All DBs
Position
3:complement(24451631..24524511)
Genome browser
AA seq
1552 aa
AA seq
DB search
MGSGGGSRVGSEWNKQPNANIEHGSGLESGSGSWSVSGSGVEPESGPTLKPVTWSPLREN
QEIKNVQTNLSFAGHIMHVLAEDANLKKNLTKADLHEMDEHVGIAVGPTGDPLTKRGVSL
SELIGYPLPEGVTKSFDPEPGFVLDQNSKTGQLARVHLPTSFYRDFSLMFNLKPTSSKSG
VIFSITDTNQKIMYVGVKLTALKDGKQNIVLFYTEPDSQTSYEAASFVVPSLVNIWTRFS
ISVLDEQVTLYPSCDSEPQILPFERSPDEMDLEPGAGIFVGQAGGADDDKFVGIIGDLKV
VNDPRAAERYCEEEEDDSDGASGDYGSGDYENKHTVSTTSQPSIPLQQPPVITSPVVTVN
KDVLKGSVDGYGRISGSYGDSRRTSGSHANSGKSSGIHEDSFGAYDSSRRTFGSYDNSES
TSDIRDVSGHTSISADGLRTSVSIQESRRTSDQTADSGRISSSGRVVGLTETSRHLHTVS
SGGRVVSGSGVERGNSVELRPGASSSQVGPVARGEKGEKGDKGVKGDRGPAGPKGDGGSI
IGSGGGAKGEKGSPGEKGIKGAAGFGYPGTKGDQGPPGPPGLPGPPGSSADVVERGDGSV
VQRIAGPRGPPGPSGPPGPAGPEGEAGDPGEDGKAGPQGTPGLPGVPGDPGAKGEKGDRG
EGHPGPRGPPGPPGPPSRSDRPTFVDMEGSGFGDLEGLRGLPGLPGPPGPPGPPGPALNN
ISHSTSPGVPGPVGPSGKDGIPGQPGLPGLPGTDGKPGLPGPKGEKGDTGALGLPGAVGE
KGAQGPPGHAGAPGQTGLAGLPGPMGPVGPPGPPGRSYPVGFDDMEGSGEIFSGGVPGVR
GPEGIRGPPGLPGQPGIPGQKGERGSDGQTGIPGHPGLDGFPGPQGPQGERGFKGDRGEP
GRDGIGLPGPPGPPGEMLYRSLDGHELGADRRTSGIPGQAGFPGPIGPKGDRGDVGAPGY
GMKGEKGEPGVVIGPDGSPLFLGSVVGPKGEMGSPGPVGPPGPYGPAGMKGEIGMPGRPG
RPGIIGGKGEKGEPATGSGYSYPGPPGPPGPPGPPGPPQYPVDIFGRHEDTGRVHQGVKG
DKGDPGLPGIPGVSGNLDLYTLKRELKGDSGEPGTKGEKGEPGGHYGPHYGGVQGPPGPP
GPKGDSIQGPPGPQGPPGYPGNSHPGLPGPPGPPGPPGLPSLPGAHRPSVSIPGPPGPPG
SPGLPGQNAGVIILRTFDLMLATAQRQPEGALIYTLDKSDLYLRVRDGVRQVMLGGYTSL
YRDSNNEVAAVQPPPVVHYSQSHSANNGAEHYSHVVDTPVRQPESEHSQPAVDPQYNTHY
SSHPVPRYPPQPDHRYPPLTEHQYIPAPPERYPSTHIHRPSTPVHQPEAHEHTSGPGLHL
IALNSPQVGNMRGIRGADFLCFQQARAAGLKGTFRAFLSSKLQDLYSIVRKSDRNTLPLV
NLKDQVLYSSWDSLFGDSEGRMKTNIPIYSFDGRDILRDSAWPEKMVWHGSSGKGHRQMD
NYCETWRTSDHAVMGLASSLQAGQLLQQKPSSCSNNFIVLCIENSYITQSKK
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggagggggatctagagttggttcagagtggaataagcagccaaatgcaaat
atagaacatggttctgggttagagtctgggtccggatcgtggtctgtttctgggtctggt
gttgaacccgaatctgggcctacgcttaaacctgtcacttggtcccctctgagggaaaac
caagaaatcaaaaatgtgcaaaccaatttgtcttttgctgggcatatcatgcatgttctt
gcagaggatgccaacttgaagaagaatctgacgaaggcggatctccatgaaatggatgag
catgttggcattgctgttggtccaactggagaccctcttacaaagagaggtgtttcgctg
tcagagctgattggttacccacttcctgaaggtgtcaccaagagttttgatccagaacct
ggatttgtgcttgatcagaactccaagaccggtcaactagcccgtgtgcacctgcccaca
tctttttaccgtgacttttccctcatgttcaacctgaaacccacttcatccaaatcggga
gtcatcttctcaattacagacaccaaccagaaaattatgtatgtgggggtgaagcttaca
gccttgaaggacggaaagcagaacattgtcctcttctatactgagccagactctcagaca
tcctatgaagctgcaagttttgttgttccctcccttgtcaacatttggacacgtttctct
atcagtgtgttggatgagcaagtcaccctgtaccccagttgtgactctgaaccccagatt
ctcccatttgagcgttctccagatgaaatggatctggaaccaggagctgggatctttgtg
ggtcaagcagggggagctgatgatgataaatttgtgggtattattggagatctgaaggtg
gtcaatgaccctcgtgcagctgaacggtattgtgaggaggaagaggacgattctgatgga
gcctcgggcgattatggaagcggtgattatgaaaacaagcacacagtctcgaccacaagt
cagccttccattcctttacaacagccaccagtaataacatctcctgtcgtaacagtgaac
aaggatgtgctcaaaggctcggttgatggctatggacgtatttctggctcatacggtgat
tctcgtcgaacgtctggctcacacgcaaattctggaaaatcatctggtatacatgaagat
tcttttggtgcttatgacagttcacggcgaacatttggctcgtatgacaattctgaatca
acatctgatatacgtgatgtttccgggcatacatctatctcggctgatggcttacggact
tcggtttcgatccaagaaagcaggcgaacctcagaccaaactgctgattctgggcgaatt
tcaagctctgggagagtagtaggtttgaccgaaacctctcggcatttacatactgtgagt
agcgggggccgagttgtttctggctcaggtgttgagagaggcaactctgtggagctcagg
cctggggcgtccagctcccaagtaggcccagtagctcggggagaaaagggcgagaaagga
gacaaaggggtcaaaggagaccgtggacctgcggggcctaagggagatggagggtccatc
atcggatctggaggcggtgccaaaggagaaaaaggaagcccaggagagaaaggaataaag
ggagctgctggatttggatatcctggaacaaagggtgaccaaggacctcctggtcctcca
ggtcttcctggtccccctgggtccagtgctgatgtagtggagaggggagacggctcagta
gtgcagcgtatagcaggaccaagggggcctccaggaccttcaggtccaccaggacctgcc
gggcctgaaggagaagctggtgaccctggtgaagatggaaaagctggaccacaaggaaca
cctggtttaccaggagtccctggagatcctggagctaaaggagaaaaaggtgacaggggt
gaaggtcatcctggtcccaggggacctccaggacctccaggacctccgtctcgctcagac
aggcctacatttgtggacatggagggctctggctttggtgatctagagggtctgcgggga
ttgcctggtttgcctggtcctcctggccctcctggacccccaggacccgcactaaataat
atttcacattctactagtcctggtgttcctggacctgttggtccatctggaaaggatggc
attccaggacaaccgggacttccaggtctcccgggtactgacggaaaacccggcctgcct
ggccctaaaggagagaagggtgataccggcgcgcttggcttacctggagcagtgggagaa
aagggtgcacaagggccacctggtcatgcaggggcacctggacagactggccttgctggc
ctacctggaccaatgggacccgttggaccacctggaccgccagggcgaagctaccctgtt
ggatttgacgacatggagggttcaggtgaaatcttttctggcggcgtgcctggagtcaga
ggaccagaaggcatacggggtccacctggtctgcctggtcagcctggtatacctgggcaa
aaaggggagagaggctctgatggacaaacaggaatccctggccatcctggacttgatggc
tttcctggcccacagggaccccagggagaacgtggatttaaaggcgatagaggtgaacca
ggtcgtgatgggatcggtctaccaggaccccctggacctccaggagaaatgctctatcgg
tcattagatggtcatgaacttggggctgatagacgcacgtctggcatccctggtcaagca
ggatttccaggcccaataggaccgaagggtgacagaggagatgtaggtgctccaggatat
gggatgaagggcgagaaaggagagcctggtgttgttattgggcctgatggaagcccactg
tttcttggttcagtggttggtccaaagggtgagatgggctctcctggaccagttgggcct
cctggaccatatggtcctgctggcatgaagggtgagatcggaatgccaggcaggcctggc
cggccaggtattattggaggtaaaggagaaaaaggagagccagccactggctcaggatat
agttacccgggtcctccagggcctccaggacctccaggacccccaggacccccacaatac
cctgtggatatatttggtagacatgaagacactggaagagttcatcaaggtgtgaaagga
gataagggagaccctggactccctggtatccccggggtttcaggcaacttggacctttac
actctaaagagagagctgaagggtgatagtggagagcctggaacgaaaggagaaaagggc
gagccgggtgggcactatggtcctcactacggaggcgtgcagggaccaccaggacctcct
ggtcctaaaggagactctattcaagggcctcctggtccacagggtccaccaggatatcct
ggtaatagccatccaggactcccaggaccacctggacctcctgggccacctggtttaccc
tcattacctggtgctcacagaccttcagtcagtattcctggccctcctggtcctcctggt
tctcctgggttgcctggccagaacgctggagtgataatactgagaacatttgacttaatg
ctcgcaacagcacagagacaaccagagggtgctctcatttacacgttggacaaaagcgac
ctctatctcagagtccgtgatggtgtcagacaagtcatgcttggaggttatacctctctt
tacagagattcaaacaacgaggtggcagcggtacagcctcccccggtagtgcactactct
cagagccactcagcaaataacggagcagagcattactcgcatgttgttgacactccagtc
cggcaaccagagagcgagcattctcagccagctgttgatccacagtacaacacacactat
tcctctcacccagtccccaggtacccacctcagccggatcatagatatccacccctcact
gagcatcagtacatccctgcaccaccagaaaggtaccccagtacccatattcacagaccc
agcacacctgtccatcagcctgaggctcatgaacacacatcaggaccagggctgcatctg
atcgccctgaacagccctcaggtggggaacatgaggggcatccgtggcgctgacttcctg
tgcttccagcaagcacgtgctgcaggcctgaaaggaacattcagggctttcctgtcctcc
aaactgcaggatctttacagcattgttcgaaaatctgacagaaacacacttcctcttgtc
aacctcaaggaccaagtgctgtatagcagctgggactcgctgtttggtgattcagaaggc
aggatgaagaccaacatacccatatattcatttgatggcagagatattctcagggacagt
gcttggccagagaagatggtctggcatggatccagtggtaagggtcaccgtcaaatggat
aactactgtgagacgtggaggacgtcggatcacgccgtgatgggtctggcctcgtctctg
caggctggccagctcttacagcagaaacctagcagctgctccaacaacttcatagtgctg
tgcattgagaacagctacatcacacagtctaagaagtag
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integrated database retrieval system
