Silurus meridionalis (southern catfish): 124382679
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Entry
124382679 CDS
T08004
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124382679 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124382679 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124382679 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124382679 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124382679 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124382679 (col4a2)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124382679 (col4a2)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124382679 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124382679
NCBI-ProteinID:
XP_046700742
LinkDB
All DBs
Position
3:13586521..13643156
Genome browser
AA seq
1664 aa
AA seq
DB search
MQPQHCGVVKTSRVLLISLVVLVLTSEVNAGGKKHSGICGGRDCSGGCQCFPEKGARGQP
GLLGPQGPQGPPGRTGDPGLEGFKGEKGTSGEKGITGPKGAQGMIGSPGFPGANGIPGHP
GQQGPRGKPGADGCNGTRGDPGLPGNYGIDGAFGEKGQPGRKGEKGDSLEISVYMERFRG
EPGLPGYPGHIGPAGAKGFQGRPGIMGARGEKGYRGPPGPKGTPTVILKGEKGEQGEVGA
PGPPGLQELLEPPLQGFKGEKGFKGEPGDIGFHIKGETGIVGPPGERGSPGFPGVPGKKG
EAGDDGNHGQQGQKGELGEAGELIYSNGYSEVGPPGPPGERGSPGSVGLKGYKGVQGPPG
KDATEQLLVEPGPFGERGEKGNKGDAGEPGIPASEPGPLGFDGLPGPPGPAGPKGSWRVF
FKGSEGPPGRPGNAGVKGHKGDHGHCECILQTSPRGPPGPAGDQGDLGIEGELGPQGDPG
DMGLKGFSGLPGFPGPLGFPGPKGIKGDKIEVKEKGAPGDPGDRGGQGEQGTQGRPGTSG
IDGTPGFEGLPGERPVGEPGDKGYPGKPGQRGIPGQEGEHGQVIGGVKGVKGITGDAGLD
GYDGIPGLQGPSGDCSLQGEGGKWITAGDCEAVSGPQGERGPPGQPGLEGMPGLPGPKGF
AGDRGKIGPQGAQGDQGFGGPSGKPGFIGPRGEAGSTGPKGLKGSSGIPGRPGLNGEPGQ
KGPNGEALGASPGPPGERGPPGQQGIKGPPGDPGTAGYPGMEGMPGMVGKKGESGPPGLQ
GERGKLGPAGTFGFPGKPGQIGSSGPPGKTGLPGPSGETGHRGNVGPPGPIGVKGVKGEP
GSDSGPGDYGTRGDPGDPGHVGRTGVIGLKGIKGSEGMPGFPGMVGNPGLKGLSGEIGPV
GFPGLKGEKGGLGLQGEKGERGVMGPQGNMSVTQLRHMKEVMKGAKGDHGHEGDPGFTGP
RGFKGVQGLPGKDGSHGLPGLPSSTKGVKGQTGAQGLPGQKGMPGIQGPPGIHGFHGSAG
TRGDKGSPGAYGPTGEVGFKGIKGDQGDVIDLPGATGIRGETGPLGPLGQKGSIGDPGVT
GTPGFDGIVGIKGTQGEPGRQGLPGADGQPGFPGNQGSKGWPGPPGKAGAPGKQGHLGQI
GFPGFDGISGLHGLKGQKGLQGVAGLDDWGEPGEDGVKGEKGNAGIPNTEAGIPGAHGLK
GSIGDPGDQGEPGPPGEQGPPGAQGIPGRKGLSGDPGLPGQKGFLGPPGKIGLPGFPAPP
GTKGDRGTQGDLGFLGPKGLLGNTGDKGFSGESGVPGGKGIKGEMGDMGVPGPTGLQGDR
GPAGSKGGTGPPGPPGLPGAKGLPPVPVKVPGERGPPGPPGNQGTQGVRGELGPVGDPGD
QGYNGPQGQKGMPGLPGIPGTPGFRGDDGPIGHQGLQGLEGNRGRPGNPGLPGMPGRSVS
VGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLRRFNTMPFL
YCNPGDVCYYASRNDKSYWLSTTASIPMMPVEESEIKPYISRCSVCEAPSVAIAVHSQDI
TIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAKGSCHY
FSNKHSFWLTSIDQSFHSSPESETLKAGQLLSRISRCQVCMKNL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgcagccacagcactgtggagtagtaaaaacctcgagggttcttttgatttctctggtc
gtcctcgtcctgacgtcagaagttaacgcgggtggtaagaagcacagtgggatatgtggg
ggaagagactgcagtggtgggtgtcagtgctttcctgaaaaaggtgcaaggggtcagcca
ggcttgcttggccctcagggccctcaagggcctccgggacgtacaggtgatcctggcttg
gagggttttaagggagagaagggtacgtcgggtgaaaaaggcatcacaggaccgaaagga
gctcagggaatgataggaagtccagggtttccgggagcaaatggtattccaggtcaccca
gggcaacaaggacctcgaggaaaacctggtgctgatggctgtaatggaactcggggagac
cctggattacctggcaattatgggattgatggtgcttttggagaaaaaggtcagccaggc
aggaagggtgagaaaggcgactccttggagattagcgtttatatggagagattccggggt
gagccaggtcttccaggatatccaggacatataggccctgctggtgcaaaagggtttcaa
ggacgaccaggtatcatgggtgctaggggtgaaaagggctatagaggacctcctggacca
aagggcactccaactgtaattcttaaaggagaaaaaggagaacagggggaggttggagct
ccagggccaccagggcttcaagaattgttggaaccaccattgcaaggcttcaaaggcgag
aaaggttttaagggtgaaccaggagatatagggtttcatatcaaaggagagacaggaata
gttgggcctcctggtgaacggggatctccaggctttcctggggtgccaggaaaaaagggt
gaagctggggatgatggtaatcatggacagcaaggacaaaagggggaactaggagaggca
ggagagctgatctattcaaatggatatagtgaagttggcccaccaggtccgccaggagaa
cgtggatcaccagggtctgttggcctcaaaggatataaaggagttcaaggtccccctggg
aaagatgctacagaacagctgttagtagaacctggcccatttggggaacgaggggaaaag
ggaaataaaggtgatgctggggaacctggtatcccagcctcagagcctgggcctctgggc
tttgatggcttaccaggaccacctgggccagccggaccaaaaggatcatggagagtgttt
tttaaagggtccgaagggccacctggacgtccaggaaatgctggagtgaaaggacacaaa
ggtgaccatggtcattgcgaatgcattttgcaaacctcccctcgtggaccccctggccct
gctggtgatcagggtgaccttggaatagagggcgagttgggtcctcagggtgatccagga
gacatgggtctcaaaggatttagtggtctgcctggctttcctgggccactaggttttcct
ggacctaaaggaattaagggagataaaatagaggttaaagaaaaaggagcacctggagat
ccaggagaccgagggggacaaggtgaacaaggaactcagggcagacctgggactagtgga
atagatggtacccctgggtttgaaggccttcctggagaaaggccagttggtgaacctgga
gataagggttacccaggcaaaccaggtcaacgaggcatcccaggacaagaaggggaacac
ggtcaagtaatcggaggtgttaaaggtgttaagggtataactggtgatgcaggattagat
ggttatgatggaatccctggcctacagggtccttcaggagactgtagtctacaaggagaa
ggaggcaaatggattacagcaggggattgtgaagcagtttctggacctcagggggagaga
ggacctccagggcagcctggattggagggaatgccaggattacctggtccaaaaggattt
gcaggagatagaggcaagataggacctcaaggagctcaaggagaccagggatttggtggc
ccctctggaaaaccaggttttattggaccccggggagaagctggaagtactggaccaaaa
gggttgaaaggttcttctggtatacctggtaggccaggacttaatggtgaacctggacaa
aagggtcctaatggtgaagcactaggagcatctcctgggcccccaggtgaacgtggacca
ccaggacagcaggggataaaaggtccccctggagatcctggcacagctggatacccaggt
atggagggaatgccaggaatggttgggaagaaaggtgaatcaggtcccccaggcttacag
ggagaaagaggaaaacttggaccagcaggaacatttgggtttcctgggaagcctggtcag
ataggatcctctggacctcctggcaaaactggactaccagggcctagtggagaaacaggc
catcgaggaaatgttggtcctccaggtcccataggagtaaaaggtgttaagggagaaccc
ggaagtgattcaggtccaggagattatggaacacgtggagatccaggagaccctggacat
gtagggaggactggtgttattgggcttaaaggtataaagggctcagaaggcatgccaggt
ttcccaggaatggtaggaaatcctggtctaaaaggcctttcaggagagatagggccagta
ggatttccaggactaaaaggagagaaaggaggcttgggcctacagggagaaaaaggtgaa
agaggagttatgggccctcaaggtaacatgtctgttacacaacttagacacatgaaagag
gttatgaagggtgcaaaaggtgaccatggacatgaaggagatccaggtttcactggtccc
cgaggtttcaaaggtgtgcaagggcttccaggaaaagatgggtcccatggattacctggt
ctacccagcagtacaaaaggtgtgaaaggacagactggagctcaggggcttcctggtcag
aaagggatgccaggcattcaagggcctccaggaattcatggatttcatggatcagctgga
actaggggggacaaaggttcacctggtgcttatggaccaacaggtgaagttggattcaaa
ggcatcaaaggtgaccagggtgatgttatcgatcttccgggagccacaggaatcaggggg
gaaactgggcctcttggacctttaggtcaaaaaggttccataggtgaccctggagttaca
ggaactcctggtttcgatggcattgtcggaattaaagggactcagggtgagcctggaaga
caaggcttaccaggtgctgatggtcaacctgggtttccaggaaaccagggttctaagggc
tggcctggaccaccaggaaaggcaggggcccctggtaaacaaggtcatttgggacaaata
ggttttcctggctttgatggcatttcaggattgcatggccttaaaggtcaaaagggcctt
caaggtgttgcaggtcttgatgattggggggaaccaggtgaggatggggtaaaaggagag
aaaggaaatgcaggtattcccaacacagaggccggtatccctggagctcatgggctgaaa
ggttcaataggagatccaggtgatcagggtgagccaggccctccaggagagcaagggccg
ccaggagcacagggaattcctggcagaaagggtctatcaggggacccaggtttacctggt
cagaaaggttttctaggcccccccggaaagattggtcttccaggttttccagctccacct
ggaactaaaggagatcgtggcactcaaggcgatcttggcttcttaggaccaaaagggcta
ttaggaaacacaggagacaaaggattttctggagagtctggtgtaccaggaggaaaaggt
ataaagggagaaatgggagacatgggtgtcccaggaccgactggtttacaaggtgacaga
ggccctgctggatcaaaaggaggaactggaccaccaggtcctcctggcctccctggtgcc
aaaggactccctccagttcctgtgaaggtgccaggggagagagggccccctggtccacct
ggtaaccaaggaacacaaggagtaagaggggagttaggccctgtgggagaccctggagat
cagggttataatggaccacaagggcaaaaggggatgccagggctgcctggaataccagga
acaccaggtttccgtggggatgatggaccaatcggacaccaaggtcttcagggtctagaa
ggaaaccgtggccgtcctggtaatcctggtctgccaggtatgcctggacgcagtgtcagt
gttgggtaccttctggtgaaacacagtcagtctgatcagactccaatgtgccctgttgga
atgtccaaattgtgggatggctacagcttactttactttgaagggcaggagaaagctcat
aatcaggacctaggtctggcaggctcttgtctccgtcgttttaacaccatgccattcctg
tattgcaaccctggtgacgtatgctactatgctagtcgtaacgataagtcctattggctc
tccactactgcctctattcccatgatgcctgtggaagagtcagaaataaagccctatatc
agccgttgctcagtatgtgaggctccatcagtggctatagctgtacacagtcaggatata
actatcccacaatgccctgcaggctggagaagcttatggattggctactccttccttatg
catacagcagctggagatgaaggaggcggccagtctctggtgtctccaggctcatgtctg
gaggatttccgcaccactcccttcattgagtgtaatggagcgaagggtagctgtcactac
ttctctaacaagcacagtttctggctaacatccattgaccagtctttccacagttcccct
gagtctgagacactcaaagctggacagctcctctcgcgaatcagtcgatgccaagtctgc
atgaaaaacctgtaa
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