Silurus meridionalis (southern catfish): 124382679
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Entry
124382679 CDS
T08004
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124382679 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124382679 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124382679 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124382679 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124382679 (col4a2)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124382679 (col4a2)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124382679 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124382679
NCBI-ProteinID:
XP_046700742
LinkDB
All DBs
Position
3:13586521..13643156
Genome browser
AA seq
1664 aa
AA seq
DB search
MQPQHCGVVKTSRVLLISLVVLVLTSEVNAGGKKHSGICGGRDCSGGCQCFPEKGARGQP
GLLGPQGPQGPPGRTGDPGLEGFKGEKGTSGEKGITGPKGAQGMIGSPGFPGANGIPGHP
GQQGPRGKPGADGCNGTRGDPGLPGNYGIDGAFGEKGQPGRKGEKGDSLEISVYMERFRG
EPGLPGYPGHIGPAGAKGFQGRPGIMGARGEKGYRGPPGPKGTPTVILKGEKGEQGEVGA
PGPPGLQELLEPPLQGFKGEKGFKGEPGDIGFHIKGETGIVGPPGERGSPGFPGVPGKKG
EAGDDGNHGQQGQKGELGEAGELIYSNGYSEVGPPGPPGERGSPGSVGLKGYKGVQGPPG
KDATEQLLVEPGPFGERGEKGNKGDAGEPGIPASEPGPLGFDGLPGPPGPAGPKGSWRVF
FKGSEGPPGRPGNAGVKGHKGDHGHCECILQTSPRGPPGPAGDQGDLGIEGELGPQGDPG
DMGLKGFSGLPGFPGPLGFPGPKGIKGDKIEVKEKGAPGDPGDRGGQGEQGTQGRPGTSG
IDGTPGFEGLPGERPVGEPGDKGYPGKPGQRGIPGQEGEHGQVIGGVKGVKGITGDAGLD
GYDGIPGLQGPSGDCSLQGEGGKWITAGDCEAVSGPQGERGPPGQPGLEGMPGLPGPKGF
AGDRGKIGPQGAQGDQGFGGPSGKPGFIGPRGEAGSTGPKGLKGSSGIPGRPGLNGEPGQ
KGPNGEALGASPGPPGERGPPGQQGIKGPPGDPGTAGYPGMEGMPGMVGKKGESGPPGLQ
GERGKLGPAGTFGFPGKPGQIGSSGPPGKTGLPGPSGETGHRGNVGPPGPIGVKGVKGEP
GSDSGPGDYGTRGDPGDPGHVGRTGVIGLKGIKGSEGMPGFPGMVGNPGLKGLSGEIGPV
GFPGLKGEKGGLGLQGEKGERGVMGPQGNMSVTQLRHMKEVMKGAKGDHGHEGDPGFTGP
RGFKGVQGLPGKDGSHGLPGLPSSTKGVKGQTGAQGLPGQKGMPGIQGPPGIHGFHGSAG
TRGDKGSPGAYGPTGEVGFKGIKGDQGDVIDLPGATGIRGETGPLGPLGQKGSIGDPGVT
GTPGFDGIVGIKGTQGEPGRQGLPGADGQPGFPGNQGSKGWPGPPGKAGAPGKQGHLGQI
GFPGFDGISGLHGLKGQKGLQGVAGLDDWGEPGEDGVKGEKGNAGIPNTEAGIPGAHGLK
GSIGDPGDQGEPGPPGEQGPPGAQGIPGRKGLSGDPGLPGQKGFLGPPGKIGLPGFPAPP
GTKGDRGTQGDLGFLGPKGLLGNTGDKGFSGESGVPGGKGIKGEMGDMGVPGPTGLQGDR
GPAGSKGGTGPPGPPGLPGAKGLPPVPVKVPGERGPPGPPGNQGTQGVRGELGPVGDPGD
QGYNGPQGQKGMPGLPGIPGTPGFRGDDGPIGHQGLQGLEGNRGRPGNPGLPGMPGRSVS
VGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLRRFNTMPFL
YCNPGDVCYYASRNDKSYWLSTTASIPMMPVEESEIKPYISRCSVCEAPSVAIAVHSQDI
TIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAKGSCHY
FSNKHSFWLTSIDQSFHSSPESETLKAGQLLSRISRCQVCMKNL
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgcagccacagcactgtggagtagtaaaaacctcgagggttcttttgatttctctggtc
gtcctcgtcctgacgtcagaagttaacgcgggtggtaagaagcacagtgggatatgtggg
ggaagagactgcagtggtgggtgtcagtgctttcctgaaaaaggtgcaaggggtcagcca
ggcttgcttggccctcagggccctcaagggcctccgggacgtacaggtgatcctggcttg
gagggttttaagggagagaagggtacgtcgggtgaaaaaggcatcacaggaccgaaagga
gctcagggaatgataggaagtccagggtttccgggagcaaatggtattccaggtcaccca
gggcaacaaggacctcgaggaaaacctggtgctgatggctgtaatggaactcggggagac
cctggattacctggcaattatgggattgatggtgcttttggagaaaaaggtcagccaggc
aggaagggtgagaaaggcgactccttggagattagcgtttatatggagagattccggggt
gagccaggtcttccaggatatccaggacatataggccctgctggtgcaaaagggtttcaa
ggacgaccaggtatcatgggtgctaggggtgaaaagggctatagaggacctcctggacca
aagggcactccaactgtaattcttaaaggagaaaaaggagaacagggggaggttggagct
ccagggccaccagggcttcaagaattgttggaaccaccattgcaaggcttcaaaggcgag
aaaggttttaagggtgaaccaggagatatagggtttcatatcaaaggagagacaggaata
gttgggcctcctggtgaacggggatctccaggctttcctggggtgccaggaaaaaagggt
gaagctggggatgatggtaatcatggacagcaaggacaaaagggggaactaggagaggca
ggagagctgatctattcaaatggatatagtgaagttggcccaccaggtccgccaggagaa
cgtggatcaccagggtctgttggcctcaaaggatataaaggagttcaaggtccccctggg
aaagatgctacagaacagctgttagtagaacctggcccatttggggaacgaggggaaaag
ggaaataaaggtgatgctggggaacctggtatcccagcctcagagcctgggcctctgggc
tttgatggcttaccaggaccacctgggccagccggaccaaaaggatcatggagagtgttt
tttaaagggtccgaagggccacctggacgtccaggaaatgctggagtgaaaggacacaaa
ggtgaccatggtcattgcgaatgcattttgcaaacctcccctcgtggaccccctggccct
gctggtgatcagggtgaccttggaatagagggcgagttgggtcctcagggtgatccagga
gacatgggtctcaaaggatttagtggtctgcctggctttcctgggccactaggttttcct
ggacctaaaggaattaagggagataaaatagaggttaaagaaaaaggagcacctggagat
ccaggagaccgagggggacaaggtgaacaaggaactcagggcagacctgggactagtgga
atagatggtacccctgggtttgaaggccttcctggagaaaggccagttggtgaacctgga
gataagggttacccaggcaaaccaggtcaacgaggcatcccaggacaagaaggggaacac
ggtcaagtaatcggaggtgttaaaggtgttaagggtataactggtgatgcaggattagat
ggttatgatggaatccctggcctacagggtccttcaggagactgtagtctacaaggagaa
ggaggcaaatggattacagcaggggattgtgaagcagtttctggacctcagggggagaga
ggacctccagggcagcctggattggagggaatgccaggattacctggtccaaaaggattt
gcaggagatagaggcaagataggacctcaaggagctcaaggagaccagggatttggtggc
ccctctggaaaaccaggttttattggaccccggggagaagctggaagtactggaccaaaa
gggttgaaaggttcttctggtatacctggtaggccaggacttaatggtgaacctggacaa
aagggtcctaatggtgaagcactaggagcatctcctgggcccccaggtgaacgtggacca
ccaggacagcaggggataaaaggtccccctggagatcctggcacagctggatacccaggt
atggagggaatgccaggaatggttgggaagaaaggtgaatcaggtcccccaggcttacag
ggagaaagaggaaaacttggaccagcaggaacatttgggtttcctgggaagcctggtcag
ataggatcctctggacctcctggcaaaactggactaccagggcctagtggagaaacaggc
catcgaggaaatgttggtcctccaggtcccataggagtaaaaggtgttaagggagaaccc
ggaagtgattcaggtccaggagattatggaacacgtggagatccaggagaccctggacat
gtagggaggactggtgttattgggcttaaaggtataaagggctcagaaggcatgccaggt
ttcccaggaatggtaggaaatcctggtctaaaaggcctttcaggagagatagggccagta
ggatttccaggactaaaaggagagaaaggaggcttgggcctacagggagaaaaaggtgaa
agaggagttatgggccctcaaggtaacatgtctgttacacaacttagacacatgaaagag
gttatgaagggtgcaaaaggtgaccatggacatgaaggagatccaggtttcactggtccc
cgaggtttcaaaggtgtgcaagggcttccaggaaaagatgggtcccatggattacctggt
ctacccagcagtacaaaaggtgtgaaaggacagactggagctcaggggcttcctggtcag
aaagggatgccaggcattcaagggcctccaggaattcatggatttcatggatcagctgga
actaggggggacaaaggttcacctggtgcttatggaccaacaggtgaagttggattcaaa
ggcatcaaaggtgaccagggtgatgttatcgatcttccgggagccacaggaatcaggggg
gaaactgggcctcttggacctttaggtcaaaaaggttccataggtgaccctggagttaca
ggaactcctggtttcgatggcattgtcggaattaaagggactcagggtgagcctggaaga
caaggcttaccaggtgctgatggtcaacctgggtttccaggaaaccagggttctaagggc
tggcctggaccaccaggaaaggcaggggcccctggtaaacaaggtcatttgggacaaata
ggttttcctggctttgatggcatttcaggattgcatggccttaaaggtcaaaagggcctt
caaggtgttgcaggtcttgatgattggggggaaccaggtgaggatggggtaaaaggagag
aaaggaaatgcaggtattcccaacacagaggccggtatccctggagctcatgggctgaaa
ggttcaataggagatccaggtgatcagggtgagccaggccctccaggagagcaagggccg
ccaggagcacagggaattcctggcagaaagggtctatcaggggacccaggtttacctggt
cagaaaggttttctaggcccccccggaaagattggtcttccaggttttccagctccacct
ggaactaaaggagatcgtggcactcaaggcgatcttggcttcttaggaccaaaagggcta
ttaggaaacacaggagacaaaggattttctggagagtctggtgtaccaggaggaaaaggt
ataaagggagaaatgggagacatgggtgtcccaggaccgactggtttacaaggtgacaga
ggccctgctggatcaaaaggaggaactggaccaccaggtcctcctggcctccctggtgcc
aaaggactccctccagttcctgtgaaggtgccaggggagagagggccccctggtccacct
ggtaaccaaggaacacaaggagtaagaggggagttaggccctgtgggagaccctggagat
cagggttataatggaccacaagggcaaaaggggatgccagggctgcctggaataccagga
acaccaggtttccgtggggatgatggaccaatcggacaccaaggtcttcagggtctagaa
ggaaaccgtggccgtcctggtaatcctggtctgccaggtatgcctggacgcagtgtcagt
gttgggtaccttctggtgaaacacagtcagtctgatcagactccaatgtgccctgttgga
atgtccaaattgtgggatggctacagcttactttactttgaagggcaggagaaagctcat
aatcaggacctaggtctggcaggctcttgtctccgtcgttttaacaccatgccattcctg
tattgcaaccctggtgacgtatgctactatgctagtcgtaacgataagtcctattggctc
tccactactgcctctattcccatgatgcctgtggaagagtcagaaataaagccctatatc
agccgttgctcagtatgtgaggctccatcagtggctatagctgtacacagtcaggatata
actatcccacaatgccctgcaggctggagaagcttatggattggctactccttccttatg
catacagcagctggagatgaaggaggcggccagtctctggtgtctccaggctcatgtctg
gaggatttccgcaccactcccttcattgagtgtaatggagcgaagggtagctgtcactac
ttctctaacaagcacagtttctggctaacatccattgaccagtctttccacagttcccct
gagtctgagacactcaaagctggacagctcctctcgcgaatcagtcgatgccaagtctgc
atgaaaaacctgtaa
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