KEGG   Silurus meridionalis (southern catfish): 124382751
Entry
124382751         CDS       T08004                                 
Symbol
parp4
Name
(RefSeq) protein mono-ADP-ribosyltransferase PARP4 isoform X1
  KO
K10798  protein mono-ADP-ribosyltransferase 3/4 [EC:2.4.2.-]
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03410  Base excision repair
smeo04210  Apoptosis
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    124382751 (parp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    124382751 (parp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smeo03400]
    124382751 (parp4)
DNA repair and recombination proteins [BR:smeo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     124382751 (parp4)
SSDB
Motif
Pfam: VIT PARP4_MVP-ID PARP VWA_3 VIT_2 WGR-like_PARP4 VWA BRCT_2 VWA_2 BRCT PTCB-BRCT Ssl1
Other DBs
NCBI-GeneID: 124382751
NCBI-ProteinID: XP_046700922
LinkDB
Position
3:11895076..11914930
AA seq 1858 aa
MAVFSDCSVVLDLKNAPYKEKKKLMTAVLDNGGNIAYVVNQKSSFVVATSLETISISKWR
NAQRHKIPVVSVQYVWSCLEKGVLLPVQEHVFKPPSSDLTPKPAPFSGLKFRDQPQNSGI
YHEKPELEVKDGAYLGRFRLYRENDHDIPEFPPDFQIAKYSILAKAQPKTWSVLELQSTK
GQAGRQYRVVSSIIHEAEKSAVCDKQVHSCSSEDAVEAYLMLSNELQLQGFTQTQSLPPW
AEKLTSHSLQQLLLEEKLNCSTVLQEVGVFLELIWTEALGSLSGILTVPVTSISLNDVSR
VEGLLLQVQKTQNEDEVKDLLKEVNTLLPVSMKEPESVPKLVSQKLDLCQLIRDILNVTE
VTLGNPFPSSLGKYRALRCSIEQVPFESPEFLSVSHLLQDRPAQIQKILRVSRGTELLMF
RNELDNIKPLLHSTASSSLVGILSRGLLLPRVGVEQHGVERTDIGNLGSGIYFSDSLNTS
IKYSKPSVNDGCRLLLVCDVALGQCKDLDKRDFTLTSAPEGYNSVHGVRRTEKTHSDFED
DEYVVYNTDQIRLKYVVQYFLPDDEVKDFQPHVNTTLAPPHFSSSSLLLPSDDGEGLGET
KNPLEEVTAGLLDSNGQTLPLKAVHVRCKLLDLISQVVIFQTYTNTSSVPIEAKYVFPLE
ETAAVCGFEAFINGKHVIGKVKEKEQARKEYKQAIEKGHGAYLMDQDAPDVFTISVGNLP
PGATVLIKVTFITELVVRAGTIVFALPGSVAPWEQSSALNQRTQTTVEKVCVNELQPEGE
FSLCMSIEMPIEITKLECSHQIKIKRTDCMAVVSTLPDQTLSTDGFRLSVTLLQMHMPRM
WVEKHPEKDTEACMLVFYPYFYSSGVSDVSDVIIVLDTSESMRGDAMVNARRVALKVLNS
LDRSLRVNIISFGSDYKEAFPSSSVLEDVFEEAKKFIMTSAAVGGSTELWRPLRTLSLLP
PSHKIRNVLLISDGHVQNQPETLQLVRDNVKHTRLFTCGLSLTANRYILRALAQAGGGTY
EFFDTKTKHTWAEKVNSQVRCMVSPGCSSVTVKWQRFNSTAPPPVQAPSQLQALFSDCHT
LVYGFVPHCTQATLFGKLRGKKKIENMVSTTELQKTKGTFLHKLTARAIIRDYEDGSLGF
SEAEHEGKKAELKSYIIELSKEFSILSQFTSFVAIEERDEEQPDSGFTDITKIIAEEDVD
VLSYMGWSSFEQEQWNRESDEEVAASSQGSQESDEEDEESSKGSQESDEEDEERSKSCQE
SVDDNEYYQGSQESDEEDEECSKEYDDVQFYDFLKLSEISVSSSLHMTEEQSEISEGCAF
VRPLKSFGRRMPAFECGSSPDTVCPSTNDIIPDSSPADIDIEVPRHHCFQQKSKKAYEPK
MCSLASMDVLPPRSNDSLASNTFMLSRAIPCSGYLRVPPTSIDRSGRDSEITASIDSLRT
TLPSPSPGSTALAPAAHLDPPYVTPVFGFGSSGSSVPPCGFGASSYSARSSSSDFRATNA
PAIVRYHCSQIGSSVSMDTSLPRFGMGLPSIISHVEQSAPPHATVDFGFPPPTSTVGMRG
PAPPPPAPAFGFTPPASTVQYGDPASPPPAGAFGFLPSTSTVQQGAPAPRPPRVCFGSAP
SVYSHPPAFLEDPAPAFDSDAFASMPLRLHQKSFSGFNIQQSATIPQSKIMRLSAKKICR
IPREGFDQMLKDSISEQSSQPERINWEDLFNLQHQDGYWECTGTLSRFLGLDVDFFANVF
LKEKGICSLGAKAQADILKLVATLLVLQLMRVMKMADGKLFQTLFRLADHPEPRPACWEA
VKRAVEWVCWADRQYPCVCSRLELGLDWESCTRQLLKVDSLPPFSTLIPLLQRSTPVM
NT seq 5577 nt   +upstreamnt  +downstreamnt
atggctgtattcagtgactgctctgtggttctagacctaaaaaatgccccatataaagag
aaaaagaagttgatgactgctgttttggacaatgggggaaatatagcttatgtagtgaac
cagaagagttcgtttgtggttgcgaccagcctggagactataagcatcagcaagtggagg
aacgctcagagacacaagattcccgtggtcagtgtacagtatgtgtggagctgcctggag
aagggagtccttctacctgttcaagagcatgtcttcaagccaccgagctcagacctcaca
ccaaaaccagctccattctctgggctaaagttcagagatcagccccaaaacagtggcatt
tatcatgaaaaaccagagcttgaggtgaaggatggcgcgtacctgggccggttcagattg
tacagggagaatgatcacgatattccagaatttcctcccgatttccaaattgcaaaatac
tccattttggccaaggctcagcccaagacttggtcagttctggagcttcagagcaccaaa
ggccaagcaggacggcaatatcgtgttgtgagctccatcatacatgaggcagagaagagt
gcagtgtgtgataagcaggtgcacagctgtagctctgaggatgctgtggaggcgtatctg
atgctgagcaacgagctgcagctccaaggctttactcagacacaatcacttcccccatgg
gctgaaaagctgacctctcacagtcttcagcagcttctgctggaggagaagctgaactgc
agtacagtcttacaggaagtgggggtctttctggaactcatctggacagaagctctcggt
tcacttagcggtatcctgaccgtcccagtgaccagcatcagtctcaatgatgtgagcaga
gtggaaggattactgctgcaggttcagaagactcagaatgaggatgaagtcaaggatctg
ctgaaggaagtcaacactctgctacccgtcagcatgaaggagccggaatcagtacccaag
ctggtgtcccagaaactcgatctctgtcagctgatcagagatattctgaacgtgacggag
gtgactttgggaaacccctttccgtcctctttggggaaatatcgtgctctgaggtgcagt
attgagcaggtgccatttgaaagcccagagtttctgtctgtctcccatcttctgcaggat
aggccggctcagatccagaagatactgcgtgtcagtagaggaacagagcttcttatgttt
aggaatgaactcgacaacattaagcctctcctccattccactgcttccagcagcctggtg
ggaatcctgtctcggggtctattactgcccagggttggagtagagcagcatggggttgaa
agaacagacattgggaatctgggaagtggcatctacttcagtgactcgctaaacacatca
atcaagtattcaaaacccagtgttaatgatggttgtcggctgctgctggtgtgtgatgtg
gctctgggacagtgtaaagacctggacaaaagggatttcactttgacctctgcccctgag
ggttacaacagcgtgcatggagttcgccgtacagaaaaaacacactctgattttgaggat
gatgaatatgtggtgtataacacagaccagatcaggctgaaatatgtagttcaatatttt
ctacctgacgatgaagtgaaggactttcagcctcatgttaacacgacattagcacctcca
catttttcttcatcttccctcctcttgcccagtgatgatggtgagggtttgggcgagact
aagaaccctctggaggaggtcacagctggtttattggacagtaatggtcagacgctcccc
ctgaaggctgtacatgtgagatgtaagctattggaccttatctctcaggttgtcattttc
cagacctacacaaataccagcagtgttcctatcgaagcaaagtatgtcttccctctagaa
gagacagcagcagtgtgcggttttgaagcctttattaatggaaagcatgtgattggaaag
gtaaaggagaaggagcaggcacgtaaagaatacaagcaggccatagagaaaggtcatgga
gcctacctgatggaccaggatgcaccagacgtgttcaccatcagtgtgggaaacctgcca
cctggagcgacagtgctgatcaaagtaacgttcatcacagaactagttgtgagagcaggc
accatcgtcttcgccctgccaggcagtgtggctccatgggagcaaagttcagcactgaac
cagagaacccagacgactgttgagaaggtctgcgtgaatgagcttcaaccagagggagaa
ttctctttgtgcatgtctattgagatgcctatagagatcactaagctggagtgctctcat
caaatcaaaatcaagagaacagattgtatggctgtagtgagcacattaccagatcagact
ctcagcactgatggcttccggctcagcgtaactctgttgcagatgcatatgcccagaatg
tgggtggagaaacatccagaaaaggacactgaggcctgcatgttggtgttttatccatac
ttttattccagtggtgtttcggatgtgagtgatgtgatcatagtgctggatacatcagag
tccatgagaggagatgcgatggtgaacgcacgcagggttgctctgaaggtgctcaattca
ctggatcgctcactaagagtcaacatcatctcctttggctctgattacaaagaggccttt
ccttcatcaagtgtgctggaggacgtctttgaagaagccaagaaattcattatgacctca
gctgcggttggtggaagcactgagctatggagacctctgcgcaccctgagcctgctgcct
ccctcacacaaaatcagaaatgtgttacttatctctgatggacatgtgcagaaccaacct
gaaaccctgcagctggtgcgagataacgtcaagcacacacgcctcttcacctgcggcctc
agcttgacagctaaccgttacattctgagagctctggctcaggcaggtggaggaacttat
gagttttttgacacaaagacaaaacacacctgggctgagaaggtgaattctcaggttcgg
tgcatggtatcaccaggctgtagttctgtgactgtgaagtggcagaggtttaactccaca
gcgccccctcctgttcaggctccatcacagctccaagctctcttcagtgactgtcacact
ctggtctatggcttcgtcccgcactgcacccaggccacactgtttggtaaactgagggga
aagaaaaaaattgagaacatggtttcaactacagaattacagaagactaaaggaacattc
cttcacaagctaacagcaagagcaatcatcagagactatgaggatggcagccttggcttt
agtgaggcagaacatgaggggaagaaagcagagctgaaatcctatatcatcgagctcagt
aaagagttctccatcctgtcccagttcaccagctttgttgctattgaagagagagacgag
gaacaacccgactccggttttactgacatcactaaaataattgcagaagaagatgtggat
gttctttcttatatgggctggagctctttcgaacaagaacagtggaatcgggagtcagat
gaggaagttgcagcctcatcacaggggagtcaggagtcagatgaggaagatgaagaaagt
tcaaaggggagtcaggagtcagatgaggaggatgaagaacgttcaaagtcatgtcaggag
tcagtagatgataatgagtattaccaggggagtcaggagtcagatgaggaggatgaagag
tgttcaaaggaatatgatgatgttcaattctatgactttttgaaactttctgaaatttct
gttagttcttcattacacatgacggaggaacagagtgaaataagtgagggctgcgctttt
gtcagaccactcaaatcttttggaagacgcatgcctgcatttgaatgtggttcatctcct
gatactgtttgtccttccactaatgacattatcccagattcttcacctgctgatatcgat
attgaagttcctcgtcatcattgttttcagcaaaaatctaagaaagcatatgaaccaaaa
atgtgctctcttgcatcaatggacgtacttcctcctcgtagtaatgatagtctggcttct
aatacttttatgctttccagagccattccttgtagtggttatctcagagtccctcccact
tctattgatagaagtgggagggactctgagataaccgcttctattgatagtctcagaaca
actcttcctagtccttctcccggaagtactgctcttgctcctgctgctcatctcgacccc
ccttatgtaacccctgtttttggttttggatcttctggatcttctgtccccccttgtgga
ttcggagcctcaagttattctgctcgttcttctagctctgatttcagagccactaatgct
cctgcaattgttcgttatcattgttctcaaataggttcttctgtatccatggacacttct
cttccacgttttggcatgggattgccttctataatttcccatgttgaacagtctgctcct
ccccatgcaactgttgactttggattccctcctccaacttctactgttggaatgagaggc
cctgctcctccacctccagctcctgcctttggatttactcctccagcttctactgttcaa
tatggagaccctgcttcgcctcctccagctggtgcctttggattccttccttcaacttct
actgttcaacagggagcccctgctcctcgtcctccacgtgtttgctttggatcagctcct
tctgtttattctcatcctcctgcttttttggaagaccctgctcctgcttttgattctgat
gcttttgctagtatgcctttgagactccatcagaaatcattttctggctttaacattcag
caatctgcaacaattccacaatccaaaattatgaggctatctgcaaaaaagatatgcaga
attccaagagaaggctttgaccaaatgctgaaagacagcataagtgaacaatccagtcaa
cctgaaaggatcaactgggaggatctgtttaatcttcaacaccaggatgggtattgggaa
tgtactgggactctaagtagattcctaggcctggatgtagacttctttgctaatgtcttc
ctgaaagaaaaaggcatctgctctttgggcgcaaaggctcaagccgacatcttgaagctg
gtagctacgctgctggtgctacagttgatgcgagtgatgaagatggcagacgggaaactg
ttccagactctcttccgcctcgctgaccacccagagcccaggccagcctgctgggaggcg
gtgaagagggcagtggagtgggtgtgctgggcagacagacagtacccatgtgtatgcagc
agactggagcttggcttggattgggagtcctgcacacgccaactgctgaaagtggattca
ctgccgcccttctcaactctgatcccattgctccagagaagcaccccagttatgtag

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