Silurus meridionalis (southern catfish): 124382939
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Entry
124382939 CDS
T08004
Symbol
smarcal1
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
KO
K14440
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124382939 (smarcal1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124382939 (smarcal1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARP
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
124382939
NCBI-ProteinID:
XP_046701250
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All DBs
Position
3:24200112..24212746
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AA seq
874 aa
AA seq
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MSSNLTPEQQRKIEENRQKALARRAERLAQGSQQPVQAVTATHKPCQTQSHPAAVGNVKY
KPSFPPKPAASSRAHSGRQTKLIDPIPIPKRTECQTSTPSTSFVSPKPKAQGAVDFSEPK
QSSSATNFYAASVKPHNQPLDKKALNPLDSGSTVSVKKPAVCVRGKCVPHSEERFRVEVG
YNAELINVFKNIPSRNYDPATKMWNFSLEDYKQLMEEVAGLPSVSLKALEGMEGLDLSAS
SIRPKDSAALVAMMKLCQGWQKPGATIKGRCALISRSRLEVDITYHADVIGVFKQMPSKS
YDMKTRKWSFLLEDYAKLMETLNDISSVEVEPLPRAVLQAFSSQLEKSHSTPPEIPEADL
SGIDSSLTRSLMPFQQLGVNFAVSREGRLLLADDMGLGKTVQAICIAAYYRNEWPLLIVT
PSSVRFTWAEAIRRWLPSVEADSINVVVTGKDCLRSGLINIISYDLLSKMGKQNFASPFG
VLIMDESHFLKNIKTARCKAALPLLKAAKRVILLSGTPAMSRPAELYTQILAVRPTLFPR
FHDFGVRYCDAKQLPWGWDYSGSSNLAELKLLLAECLMLRRLKPDVLSQLPAKQRKVVTV
TTDGINSRTKAALSAAAKELAKECHNKKQEKDALLVFFNHTAEAKIKAILEYISDMLECG
REKFXVFAHHRRVLDSITKELTDKGISHIRIDGSTPSAERQQLCEKFQFSEQSCVAVLSI
TAANMGLTLHTADLVVFAELFWNPGILIQAEDRVHRIGQTRCVDIHYLVAKGTADDYLWP
MIQEKMNVLEQVGLSESNISDKAECASFHSKDQKQPRITEMFQRSFSEEDMDESMLLEAV
NDWEDNDQPDSVSHQDNHVSESPSKKRRIEDYFG
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaatctaacgccggaacagcagaggaaaatcgaggagaacagacagaaagcg
ttggcgagaagagccgagagacttgcacagggaagccaacaacctgtacaagctgtgact
gcaacacacaagccatgtcaaacccaatcacatcctgcagcagtaggaaatgtaaagtac
aagccgagttttcctccaaaacctgcagcaagcagcagagcccacagtgggagacagacc
aagctcatagacccaattccaatcccgaaaaggacagaatgtcaaacatctactccttcg
actagttttgtatcccccaagcccaaggcccaaggtgctgttgatttttcggaaccaaag
cagagttcctcggctactaatttctacgcagcgagtgtgaagccacacaaccagccttta
gacaagaaggcactcaatcccctggactctggctcgactgtttctgtgaaaaagcctgca
gtgtgtgtacgagggaagtgcgttcctcattcagaagagcgctttagagtagaggttggc
tacaacgcagagctcatcaatgtgttcaaaaacattccctccaggaactatgatcctgcc
acaaagatgtggaacttcagcctcgaggattataagcaactcatggaggaggtagcaggc
ctcccctctgtgtctttgaaggctctggagggcatggaaggtttggatttatccgcctcc
agcattcgcccaaaagactctgcagcactggtggccatgatgaagctgtgccagggctgg
cagaagcctggggccacaatcaagggcagatgcgcacttatttcccgttcacgcctggaa
gtggacatcacataccatgcagatgttataggggtctttaaacagatgccttcaaaaagc
tatgacatgaagacaaggaaatggagtttcctacttgaggattatgccaaattaatggag
actctaaacgacatctcttctgtggaggtcgaaccgttaccgcgtgctgtgctccaggcc
ttctcttcccagcttgagaagagccattccacacctccagaaatccctgaagccgatctc
tcgggcatagacagcagtctcacacgcagcctcatgccgtttcagcagttaggtgtcaac
tttgcagtgtccagagaaggtcgtctgctcctggctgatgatatgggcttggggaagaca
gtgcaggccatctgtattgcagcctactacagaaatgagtggccactgctgatagttact
ccttcctctgtacgcttcacctgggccgaggcgatccgccgctggttgccttcagtagaa
gcagacagcattaacgtggtggtgactggtaaagactgtctccgctctggtctcatcaac
attatcagctacgacctgcttagcaagatggggaagcagaattttgccagtccgtttggt
gtgctaattatggatgagtcccacttcctaaagaacattaaaaccgctcgctgtaaggct
gctcttcctctactaaaggctgctaaaagagtgatcctgctgtcaggaactcctgctatg
tcgcgtccggctgagctctacacccagattctggctgtgaggccaacactctttcctcgt
ttccatgattttggagtgagatattgtgatgccaagcagctcccatggggttgggactat
tccggctcctccaatttggctgaattgaagttgttgttagcggaatgtcttatgttgagg
cgattaaaacctgacgtgctctcgcagcttcctgccaagcagcgcaaggtcgtcaccgtg
actacagacggcataaactctcgtaccaaagccgcactttcggccgcagccaaagaactc
gcaaaagaatgccacaataagaagcaagagaaggatgctctactggttttctttaaccac
acagcagaggccaagattaaagccatcctcgagtacatttcagacatgctggaatgtgga
cgagagaagtttntagtgtttgcgcatcatagacgagtcctggacagcataactaaagag
cttactgataagggaatcagtcacatccgtatcgatgggtccacaccctcagcagagcgc
cagcagctgtgcgagaagttccagttctctgagcagagctgtgtggctgtgctctccatc
acagctgccaacatgggcctcacgctgcatactgccgaccttgtcgtcttcgctgagctc
ttctggaacccagggatattaattcaagcagaggacagagtgcaccgtattggacagacc
agatgtgtggacattcactacttggtagccaaaggcacagctgacgactacttgtggcca
atgatccaggagaagatgaatgttctagaacaggttggcttgtccgagtccaatatttca
gacaaggcagaatgtgccagcttccacagcaaggaccagaaacagccaagaatcacagag
atgtttcagagatcattctcagaggaggatatggacgaatcaatgctattagaagctgta
aatgactgggaagacaatgatcagccagattcagtcagccaccaggacaaccacgtctca
gagagccccagcaagaaaaggcgtatagaagactatttcggataa
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