Silurus meridionalis (southern catfish): 124383090
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Entry
124383090 CDS
T08004
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04622
RIG-I-like receptor signaling pathway
smeo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124383090 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124383090 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smeo04054
]
124383090 (ifih1)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124383090 (ifih1)
Pattern recognition receptors [BR:
smeo04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
124383090 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
ResIII
DEAD
Helicase_C
SNF2-rel_dom
SWI2_SNF2
CARD
DUF3638
AAA_22
zf-Mss51
Motif
Other DBs
NCBI-GeneID:
124383090
NCBI-ProteinID:
XP_046701422
LinkDB
All DBs
Position
3:complement(20223684..20240769)
Genome browser
AA seq
1011 aa
AA seq
DB search
MDDSQAKKTIDCFRNRLKQLIRVEPVLDVLHFFNNEQKDLIKAKLKNEGEIQAANLLLQE
IISKVYPEGWFRELLTALETVGCKQAANYMGNSPPSPSLEAENDTCVRLIDLLKLSLINM
KTCDVCHGCYERNIITAEDRQIILAETHINGSMAGARKLLSLLPKNEFGWFSQFLDALEK
TEHTRLVQELRGDPNESNESTADVDKLQSDESELAAKTEKISEAIPDNFSTRSASPPPTL
ASGPSQVSLSSTSCLEAAALDSSMNSSGFNSTMDSFAELSIGSTDLDLYEGSDQETTREQ
TPESSDESVSEKDIVLRDYQSEVAQPALEGKNIIICLPTGSGKTRVAVYITKKHLESRKS
KGQPAKVVVLVNKVPLVEQHYKAEFGKFLKHEYNVERVSGDSQLKISFPQVVEKNDIIIC
TAQILGNSLAKAKQGDEDGIKLSQFTLIVIDECHHTKKGEAYNHIMIRYLKQKHRNAALR
KEQKDPVPLPQILGLTASPGVGGARTQQSAEEHILRICANLDAYTIKTTTLGEEPKGPYK
RIASVKERKEDPFGDVIKGVMNEIHTHAQLNPLCQPGTQNYEQWVVQKEQNAAKEDNRKV
RVCAEHLRQYNEALYQSNTIRMCDAYSFLDKYYNEEIKKKCSPDDDDIQITETERFLFNL
FNAKKERLQELMKNPQYENNTLAQLRMLILEEYTTRSEARGIIFTKTRLSAIALSQWIQE
NSKFEDVGVRASHLIGGGDQSLVKPMTAAEQRDVLNKFREGVINLLIATTVAEEGLDIKQ
CNFVFRYCLVTNEIAMIQARGRGRAEDSSYTVVEVAGSGVAERESVNEYREKMMSKAITK
VCSLSLEEYEKKIKENQLQTIIEERVKIKKMNKKGMMKEDPSKVKLTCRSCGVPVCSGED
IEIIERMHHVNVTEAFRKLFTVRENTTLQERLLDYEANGVIACKNCGERWGSMMLYKGIE
FPCLHIKNFVVTYNSKKKVFSKWNELAIRFTAFDYSNHVFMQQSDDETELD
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagtcaggcgaagaaaaccatcgactgtttcagaaaccgactgaaacagctg
attcgggtcgaacctgttctggatgtgctgcacttctttaacaatgagcaaaaggatttg
ataaaagccaaactaaaaaatgaaggcgaaatccaggccgctaatcttctgctccaggaa
attataagtaaagtgtatccagaaggctggtttagggaactcttaactgcacttgaaacg
gtcgggtgtaaacaagcagccaactatatgggaaacagtcccccgagtccatccttagag
gctgagaatgacacctgtgtccggctcatagacctgctaaagctcagtctaatcaacatg
aagacctgtgatgtgtgtcacggatgttacgagaggaatattatcaccgctgaggaccgc
cagattattttagcagagacacacattaatgggtccatggctggggcccgtaagctgttg
tctctgctcccaaagaatgagtttggctggttctctcagttcttggatgctttagagaag
actgaacacaccagactggtgcaggaattgcggggagatcctaatgaatccaatgaatca
acagctgatgttgacaagctacagtcagatgaaagtgaattggctgcaaagactgagaag
attagcgaagcaattccagataacttttctaccagaagtgcctctccccctcccactttg
gcctctggcccctctcaggtttctctctcatccacttcatgccttgaggctgcagctctt
gacagcagtatgaacagcagtggcttcaattccactatggactcctttgctgagcttagc
attggaagcacagatttggacctgtatgaaggcagtgatcaggaaacaacaagagagcaa
acaccagagagttcagatgaatcagtgagcgagaaagatattgtgctgcgggattatcag
tctgaagtcgctcagccagctctggagggaaagaacatcatcatctgtctcccaacagga
agtggtaaaacccgagttgccgtgtacatcactaaaaagcatctggagagcagaaagtca
aagggacagccagcaaaagttgttgttctggttaacaaggttcctttggtggagcagcac
tacaaagcagagtttgggaagtttctgaagcacgagtacaatgtcgagagagtgagcgga
gattcacagctcaaaatctccttcccacaagtcgttgagaagaatgacatcatcatctgc
actgcacaaatcttaggaaactctttagccaaagccaaacagggtgacgaggatgggatc
aagttatcacaattcactttgatagtaatcgatgagtgccaccacacaaaaaagggcgag
gcgtataaccacatcatgatacgttacctgaaacagaagcacaggaatgctgcgcttcga
aaggaacagaaagatccggtgccgctgccacaaatcctcggcctcactgcttcacccgga
gttggaggagccaggactcagcagtcagccgaggagcatattctcagaatatgtgctaac
ttggacgcctacacaataaagaccacgactctcggagaagagcctaagggtccatacaaa
cgtattgcgagcgttaaggaaagaaaggaggatccctttggagatgtgataaaaggagta
atgaacgagattcacacacatgcccaactaaacccactgtgtcaaccaggcacacagaat
tatgagcagtgggtggtacaaaaagaacagaatgctgctaaagaagacaaccggaaagtg
cgggtttgtgcagagcatctgcgtcagtacaatgaggctctctaccagagtaacaccata
cgcatgtgtgatgcatacagctttcttgacaaatactacaatgaagaaatcaagaagaaa
tgttcgcctgacgatgacgacattcagataactgaaactgagcgatttctttttaactta
tttaatgctaaaaaagaacgtcttcaggagttgatgaaaaacccacagtatgagaataac
actctggcacaactgaggatgctcatcttggaggagtacaccaccagatctgaagccaga
ggcattatcttcaccaagactcgcctcagtgccattgctctcagccagtggattcaggag
aactcgaagtttgaggatgttggcgtcagagcaagccacctgattggtggtggggatcag
agtctggtgaaaccaatgacggcagcagagcaaagagatgtgctgaacaagtttcgtgaa
ggagtgatcaatctgctgatagccaccactgtggcagaggagggtcttgatattaagcag
tgtaattttgtcttccgatactgcttggtgaccaatgaaatcgctatgattcaggctcga
ggcagaggaagagcagaggacagcagttacactgtggtggaggtggcaggatcgggtgta
gcagaaagggaaagtgtgaatgaatacagggagaaaatgatgagcaaagctatcaccaag
gtgtgcagtctgagccttgaagaatatgaaaagaaaataaaagagaaccagctgcagaca
atcattgaggaacgtgtgaagattaagaagatgaataagaagggcatgatgaaagaggac
cccagcaaagtgaagctaacctgcaggagctgtggtgtacctgtgtgctctggagaagac
attgagatcattgaaaggatgcaccatgtaaatgtgactgaagcattcagaaagctgttt
acagtcagagagaacactaccttgcaggagagactattggactatgaggcaaatggagtt
atagcatgtaaaaactgtggagagcgttggggttctatgatgctttataaaggcatagaa
tttccatgcctccacatcaaaaactttgtggttacatacaactcaaagaaaaaggtgttc
agcaagtggaatgagttagctatcagattcactgcatttgactactctaaccatgttttt
atgcaacaatcagatgacgaaacggagctggactaa
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