Silurus meridionalis (southern catfish): 124383102
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Entry
124383102 CDS
T08004
Symbol
ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124383102 (ddx18)
03009 Ribosome biogenesis [BR:
smeo03009
]
124383102 (ddx18)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124383102 (ddx18)
Spliceosome [BR:
smeo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124383102 (ddx18)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
90S particles
Helicases
124383102 (ddx18)
Pre-60S particles
124383102 (ddx18)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
124383102
NCBI-ProteinID:
XP_046701437
LinkDB
All DBs
Position
3:complement(20762827..20769606)
Genome browser
AA seq
653 aa
AA seq
DB search
MADLQMKLLRKKIQKRNAKNKERKLRQKQREEDEEENDSKVIIEECDGETTKESPAAATE
QEMTADNQKSEDTQEDSNKKKKKKKKRKLNDTGDLNNMAVKKAKQENSNGDEAELSEAGE
EQEGANEVLEDGENDGDEQDDDSDQPELPSGLTGAFEDRSFGSLAELVSENTLKAIKEMG
FENMTEIQHKSIRPLLEGRDILAAAKTGSGKTLAFLIPAIELIYKLKFMPRNGTGVVILS
PTRELAMQTYGVMKELMAHHVHTYGLIMGGSNRSAEAQKLGNGVNIMVATPGRLLDHLQN
TAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKRQTMLFSATQTRKVEDLARIS
LKKEPLYVGVDDNKDTATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKLMVFFSSCMSV
KYHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARGLDIPEVDWIV
QYDPPDDPKEYIHRVGRTARGINGRGHALLILRPEELGFLRFLKQAKVPLSEFEFSWTKI
SDIQSQLDKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKQIYDVQTLDLPKVALSFGFKVP
PYVDLNVHSSKGVKLQKRGGGGGFGYQKSKNVHKAKIFKHFNKGKGDRRQFSR
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccttcagatgaagctgcttcggaagaaaattcagaagagaaatgcaaagaat
aaagaacgcaagcttagacaaaagcagagggaagaagacgaagaagaaaacgactctaaa
gtcataattgaggaatgtgatggagaaacgactaaggaaagtccagctgcggccacagag
caggagatgacagccgacaatcagaagagcgaagatactcaggaagacagcaacaagaag
aagaaaaagaagaagaagaggaaattaaatgacacaggagatctcaataacatggccgta
aaaaaggcgaagcaggagaacagtaacggtgatgaagctgagctctctgaggcaggagaa
gaacaagagggtgcaaatgaagtgttggaggatggtgagaacgatggagatgaacaggat
gatgattctgatcaaccggagcttccatccggactaacgggagcgtttgaggataggtcc
tttgggtcattggcagaacttgtaagtgagaacacgctcaaggctattaaagagatgggc
tttgagaacatgactgagattcagcacaaaagcatacgccccctattggagggaagagat
attcttgctgctgctaaaactggcagtgggaaaactctggccttcctcattcctgccatt
gaactcatctataaactcaaattcatgcccagaaatggtactggtgtggtgattttgtct
ccaacacgtgagttggccatgcagacatatggagtaatgaaggagttgatggcccatcat
gtgcacacttatggcctcattatgggtggcagtaaccgctcagctgaagcccagaagctt
ggtaatggagtcaacatcatggtggcaacccctggtagactgctcgatcatctacagaac
actgctggattcatgtacaaaaacctgcagtgtctgatcattgacgaagcagatagaatt
cttgaggttggattcgaggaagaacttaagcagatcatcaaactgctgccaaaaaagaga
cagaccatgctgttttcagctacacaaacaaggaaagtggaggatctggcacgaatctct
ttgaagaaagagcctctgtatgtgggagtggatgataacaaagatacagccactgtggac
ggattggagcagggctatgtggtgtgtccatcagagaagcgtttcctgctgctttttaca
ttcctgaagaagaaccgcaagaagaagctgatggtgtttttctcctcctgcatgtctgtg
aagtatcactacgagctgctcaactacattgacctgccagttatggctatccatggcaag
cagaaacagacgaagagaaccaccacatttttccagttctgcaatgcagactctgggatc
ttactctgcacagatgttgctgccagaggactggatattcctgaagtggactggatcgtc
cagtacgacccaccagatgaccccaaggaatacatccaccgtgtgggtcgaactgctcga
ggtattaatggcagaggccacgccctcctcatcctcagacctgaagagctcggcttcctg
cggttcctcaaacaggccaaggtccccttgagtgagtttgaattttcttggactaagatc
tcagatattcaatctcagttggacaagctgatcgagaagaattactacctgcataaatcg
gcccaggaggcttacaagtcatacgtgagggcgtatgattcccattcactcaaacagatc
tatgacgtacagacactcgaccttccaaaggtggcgctgtcctttggcttcaaagtacca
ccttatgtcgacctcaatgttcacagcagtaaaggtgtaaagctgcagaagaggggagga
ggtgggggctttggctaccaaaaatcgaagaatgtgcataaggccaagatcttcaaacac
tttaacaagggcaagggtgaccgcagacagttctctcgctga
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