Silurus meridionalis (southern catfish): 124383299
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Entry
124383299 CDS
T08004
Symbol
xrcc5
Name
(RefSeq) X-ray repair cross-complementing protein 5 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124383299 (xrcc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124383299 (xrcc5)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
124383299 (xrcc5)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Ku_C
VWA_2
DUF6005
Peptidase_M57
Motif
Other DBs
NCBI-GeneID:
124383299
NCBI-ProteinID:
XP_046701785
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Position
3:24159351..24171584
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AA seq
725 aa
AA seq
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MLFSQPHESAVVLCMDVGFSMSNSAPGEEAPFEQAKKVIQKFIQRQVFAENKNELGLILF
GTDNTKNPLAKDGQYQNICIHRHLMMADFELLEDIEHNLQPGSQHADWLDALVVSMDLLQ
KETIGKKYEKLNIAVLTDLNTPTCTDQLDIIIGNLKRAGITLQFFLPFPINANEEASGDG
GPRPPPQSGKGLSREQKQGLEMVRQVMTSLDEEDSLDEVYTFSDAAEKLSIFKRIERRPM
AWPCQLTIGSSLSIRIIGYKTVCEEKLKKSWSIVDAESHQKDDVKRDTVYCLNDDNETEV
QKDDVIQGFRYGSDIVPFSKVDQEQMKYKSDGKSFAVLGFTKQELINRHHFMGHQIVKVF
AAKDDEHAAVALSALIRALESLKMVAIVRYAYDRRSNPQVGAAFPCIKDTYECLVYVQLP
YNEDLRQFAFPSLESNKKFAPSEAQLSAVDNLISSMMLMEEGEDGEMEDIFKVNKIPNPH
FQRLFQCLHHCGLNPDSPLPPMEPGLKRMLDRPQAISARCNAPMQEMKNLFTLKEVVQKK
GQKTSADVFGNSTDEPDTKKFKMEEGEKFSLAETSEGNVTSVGSVNPAENFRTLVVKKTI
PFDQACEQLTHRMEQLLGNRSTDYYMKTIACIQAFREQSIKVSNATLFNNYMQSLKNSVP
DKNLQEFWDLLVADSITLISKDEVDSSAVSKHEANQFLTFEEKEEVAAAPSHEDAGDVDD
LLDMM
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcagtcagcctcacgagtcagctgttgttctttgcatggatgtgggcttctct
atgagtaactcagcccctggcgaggaagccccatttgaacaagcgaagaaagtcattcag
aaattcatccagcggcaggtctttgctgagaacaaaaacgagttgggcctgattctgttt
ggaacagacaacaccaagaatccactcgctaaagatggccagtaccagaacatttgcata
cacagacatttgatgatggctgactttgagctgctggaggacattgaacataaccttcag
cctggtagtcagcatgctgactggcttgatgctcttgtcgttagcatggatcttctgcaa
aaggaaacaattggaaaaaagtacgagaagctgaatatcgccgtgctcactgacctcaac
acacccacctgcacagatcagctggacatcatcatcggcaacttgaagagagctggaatt
accctacagttctttctgccattccctattaatgcaaatgaagaggcttctggagatgga
ggtccaaggcctcctccccagagtggtaaaggtctgagcagggagcagaagcaggggctg
gagatggttaggcaggtcatgacttcactggatgaagaagacagtctggatgaggtctac
acttttagtgatgctgcggagaagctgtccatcttcaagcgaatcgagagacggccaatg
gcgtggccctgtcagcttactattggaagctctttatccatccgcatcatcggatacaaa
accgtgtgcgaagaaaagcttaagaagtcctggtccatagtcgatgctgagagtcaccag
aaagatgatgtaaaaagggacacggtttactgcctcaacgatgacaatgagaccgaagtg
cagaaagatgatgtcattcagggcttccgttatgggagtgacattgtcccgttctccaaa
gtggaccaagagcagatgaagtacaagagcgatgggaaatcctttgctgtgcttggcttt
accaagcaggagctgattaatcgtcatcatttcatgggccatcagattgttaaggttttt
gctgccaaagatgatgagcatgcagctgttgcgctctctgctctgattcgtgccctggag
agtttaaagatggtggctatcgttcgttacgcttatgaccgccgcagcaacccacaagta
ggagcggccttcccttgcatcaaagacacatacgagtgcttggtgtatgtgcagttacca
tacaatgaggacctccgtcaattcgctttcccttcactggagagcaacaagaaatttgct
ccatcagaggctcagctgtcagcagtggacaatctcatcagctcaatgatgctgatggag
gagggtgaagatggagagatggaggacatattcaaagtcaacaaaatccccaacccacat
tttcagagactcttccagtgtctacaccattgtggtttaaacccagattcaccccttccc
cctatggagccggggcttaagcggatgctggatcgaccccaggcaatctctgctcgctgt
aatgcacctatgcaggagatgaagaacctcttcaccctaaaggaggtggtgcaaaagaaa
ggccagaaaaccagtgcagatgtgtttgggaatagcactgatgagccagacacaaaaaag
ttcaaaatggaggaaggggagaagttcagcttagcagagacttccgagggaaacgttacc
tctgtaggcagcgtgaaccctgcggaaaacttccgtactttagtggtaaagaagaccatt
ccctttgaccaagcatgcgagcagctcacccacaggatggagcagttgctgggcaacagg
agcaccgactattacatgaagaccatcgcatgcatccaggcctttagggagcagtccatt
aaggtatcaaacgcaacgcttttcaacaactacatgcagtctctgaagaacagcgtccca
gacaagaatcttcaggaattctgggatctgcttgttgcagattctataacactgatcagc
aaggacgaagtggatagcagcgcagtatccaagcacgaggcaaatcagtttctgacattt
gaagagaaagaggaagtggcagctgctccttcccacgaggacgccggagacgtggatgat
ttgctggacatgatgtga
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