KEGG   Silurus meridionalis (southern catfish): 124383331
Entry
124383331         CDS       T08004                                 
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo04137  Mitophagy - animal
smeo04144  Endocytosis
smeo04145  Phagosome
smeo04148  Efferocytosis
smeo05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    124383331 (rab5b)
   04145 Phagosome
    124383331 (rab5b)
   04137 Mitophagy - animal
    124383331 (rab5b)
   04148 Efferocytosis
    124383331 (rab5b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    124383331 (rab5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:smeo04131]
    124383331 (rab5b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:smeo04147]
    124383331 (rab5b)
   04031 GTP-binding proteins [BR:smeo04031]
    124383331 (rab5b)
Membrane trafficking [BR:smeo04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    124383331 (rab5b)
 Endosome - Lysosome transport
    124383331 (rab5b)
Exosome [BR:smeo04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   124383331 (rab5b)
  Exosomal proteins of other body fluids (saliva and urine)
   124383331 (rab5b)
  Exosomal proteins of colorectal cancer cells
   124383331 (rab5b)
  Exosomal proteins of melanoma cells
   124383331 (rab5b)
GTP-binding proteins [BR:smeo04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    124383331 (rab5b)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase MMR_HSR1 SDR-like AAA_16
Other DBs
NCBI-GeneID: 124383331
NCBI-ProteinID: XP_046701835
LinkDB
Position
3:complement(8669834..8678161)
AA seq 214 aa
MSTRANPRTNGNLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQ
SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQR
QASPNIVIALAGNKSDLAEKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNDLFLAIAKK
MPKTDTQNPTHAARHRGVNLQDPDAQSTRSCCGN
NT seq 645 nt   +upstreamnt  +downstreamnt
atgagcacccgtgcgaaccccaggaccaacgggaacctgccccagaccaagatctgccag
tttaagctggtgctgctaggggacatggcagtgggcaagtccagcctggtcttgcgcttc
gtcaagggccagtttgatgagttccaggagaccaccatcggagctgctttcttggctcag
tcagtttgcctggacgataccacggtgaagttcgagatttgggacacagccggacaggag
cgctaccacagcctggcccctatgtactatcgcggggcccaggcagctatcgtagtgttt
gatattacaaaaccggagacgtttgagcgagcaaaggcctgggtgaaggaactccagagg
caggcaagtcccaacatcgtcatcgcgctggcaggaaacaagtccgacctcgcggagaag
agactggtggagtacgaggaggctcagacgtacgctgaagacacaggcttgttgttcatg
gagacgtcggccaagaccgctatgaacgtgaacgatctattcctggccattgcaaagaag
atgccgaaaacagacactcagaacccgacgcacgccgcccggcacaggggagtcaacctg
caggacccggacgcccagtccacccgaagctgctgtgggaactaa

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