Silurus meridionalis (southern catfish): 124383402
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Entry
124383402 CDS
T08004
Symbol
chaf1b
Name
(RefSeq) LOW QUALITY PROTEIN: chromatin assembly factor 1 subunit B
KO
K10751
chromatin assembly factor 1 subunit B
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124383402 (chaf1b)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
124383402 (chaf1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_CAF1B_HIR1
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
CAF-1_p60_C
Beta-prop_TEP1_2nd
EIF3I
ANAPC4_WD40
WDR55
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_SCAP
B-prop_COPA_B_2nd
Beta-prop_EML
eIF2A
Beta-prop_HPS5
Beta-prop_IP5PC_F
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
124383402
NCBI-ProteinID:
XP_046701967
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Position
3:complement(9670286..9681488)
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AA seq
621 aa
AA seq
DB search
MVTGAFVRTRMKVVTCEIAWHNKEPVYSLDFQQNADSKIHRLATAGVDTTVRMWRVDRGP
DGKAVVEFLSNLARHTKAVNVVRFCPTAELLASGGDDAAILLWKINDSKEVEQALSFQED
EDSQLNKESWNVVKTLRGHIEDVYDLSWTSDGNFLVSGSVDNTAIMWDIQKGQKIYIFND
HKSYVQGVSWDPLGQYISTLSCDRVMRVYSTHTKKKAYSVSKMSSGSAGEGGEVKNFRMF
HDDSMRSFFRRLXFTPDGSFLLAPAGCVETGENVTNTTYVFSRKSFKRPIAHLPCPAKAT
LAVRCCPVYFELRTKKLEDGSVQSLPNVLQLPYRLVFAVASEDSIFFYDTQQTLPFGYLS
NIHYHTLSDLSWSRDGSFLAVSSTDGYCSFVSFDDLELGTPLKERPPLAIVTPLTASEKK
SKRTSNGRTASPVPRTNPSPVTQEKETSSATPEEKKTAQGRKAKSQPRRITLNTLEGWSK
TSTPKSPATPIAPPTGSPSMPKSTPSTLLPTRGPLTPKTTPSSPLTPISARNATTPKGPT
PRRISLIPLNSRSPASPQTLIAPSSTEKAKHERPSPSNDPVCKPPESKRPKTDEVSAPIV
DTSSSQSSEPSEVSSSKCMDS
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggttacaggagcgtttgttaggaccaggatgaaggtggtaacatgtgaaattgcctgg
cacaacaaggagccagtatacagtctggattttcaacagaatgctgacagcaaaatccac
cgcctggccacagctggagtggacaccacagtgcgtatgtggcgtgtggacagggggcca
gatggaaaagctgtagttgagttcctatcgaatttggcgagacatacaaaagccgtgaat
gtagttcgcttttgtccaaccgcagagctgctggcctctggaggagacgatgcagccatc
ttattgtggaagattaatgacagtaaagaggttgagcaagccctgtctttccaggaggat
gaggattcgcagttgaacaaggaaagctggaatgttgtcaagacgctcagggggcacatt
gaggatgtctatgacctgtcatggacaagtgatgggaatttcctggtttctggctctgtg
gacaacactgccatcatgtgggatatacagaagggtcagaagatctacatatttaatgac
cataagagctatgtgcaaggtgtttcctgggacccgcttggtcaatatattagcacgctc
agctgtgatagggttatgcgtgtgtacagtacgcacacaaagaaaaaggcctacagcgtg
agtaaaatgtcatcaggctctgctggagagggaggagaggtgaagaacttcaggatgttt
cacgatgacagtatgcgatccttcttcagacgcctcnactttacaccagacggctccttc
ctcctggcacccgctggttgtgtggagacgggagagaacgtaacaaacaccacctatgtg
ttctccaggaagagctttaaaagacccatagcccatctaccatgtcccgctaaagccact
ctcgctgttcgatgctgccctgtgtactttgagctcagaactaagaagcttgaagatggg
tcggtgcagtcgctgcccaatgtgttgcagcttccgtatcgcttggtgtttgcagtggca
tctgaagactccatctttttttacgacacccagcagacattgccgtttggttacttgtcc
aatattcactaccacaccctgagtgacctcagctggtctcgtgatggctcattcctagct
gtgtcatcaacggatggctattgctcttttgtgtctttcgatgacctggagcttggcacg
cctctgaaggagcggccaccgctggccatcgttaccccgctcactgccagcgagaaaaag
agcaagagaacaagtaacggacgaacagcttcacctgtgccccgcaccaacccttcacct
gtcacacaggagaaagagacttcatcagctacccctgaagagaagaaaactgcacaaggc
cggaaggccaaatcacagcccaggcgcattacccttaacacactggagggatggagcaaa
accagcactccaaaatctcctgccacacccattgcccctcctactggtagtcccagcatg
cccaaatctaccccctccacccttctgcccactcggggacctcttactcccaaaactacc
ccaagcagcccgctcactcccatcagtgccagaaacgccacaacgcctaaaggacccacc
cctaggagaatttctctgataccacttaactccagatctccagcttcacctcagacctta
atcgctccatcctctactgagaaggccaaacatgagagaccatctccttcgaacgatcca
gtgtgcaagcctcctgagtccaagcggcctaaaacagacgaagtttccgctcctattgta
gacaccagctcttctcaaagctctgagccctcagaggtgtccagcagcaagtgcatggat
tcttga
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