Silurus meridionalis (southern catfish): 124384052
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Entry
124384052 CDS
T08004
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124384052 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124384052 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384052 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124384052 (rb1cc1)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124384052 (rb1cc1)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Autophagosome formation proteins
ULK complex
124384052 (rb1cc1)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124384052 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
TIM-barrel_EndoS
DUF3020
DUF6950
Motif
Other DBs
NCBI-GeneID:
124384052
NCBI-ProteinID:
XP_046702513
LinkDB
All DBs
Position
4:8013519..8024117
Genome browser
AA seq
1561 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIAAQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSVENEMEMKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTASYQKLLSKFDVAYTNYQR
DFEDIKLKLTKLGTAVSVMAKIPLLECLTRHSYRESLEKFASPHPRAEDEPGAGRTSVPG
QGSPALGDTVAHDGGLQEALEETDKEDGPLFNVTLLDWINVQDRPNDVEAVVRKCFDSIN
RLDPRIIQPFLDECRDTITKLDNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGF
LANQMRAENLKDNSVLPDLCLSHANQLMIMLTNHRKLLDIKQKCTTAKQELANNLQVRLK
WCCYVMLHADQDGEKLQALLRLLTELLERVRVVEALSTVPQMYCLAVVEVVRRKMFVKHY
REWANALVKDGKTLYEAEKAKREMFGKLFRKSFLRNRLFRGLDSWPPSSFCTRKPRKFDF
ELPDISLNDLQYLKSCCPAEVQPFLRVPSLCDFEPLNHHTEALHHLVQAARSVDEMSQTI
TDLLSELKISGSQCAQRPGSESREETTPVSSKIPPPLILQSPPTQVLSFPAPLEDLSPDS
IDAHTFDFETIGHPNMDPVLQQGSLDLDSLAESPESDFMSAVNEFVIEENVMSPNPISDP
TSPEMMVESLYSSVINAIDSKRIQDTTMLERENSRIMTLKLTVDRYRFAAEESQGSMRKV
KEDLCHFQGLVLKEQRDFSFALKNLSAEIHGIVNDVARRQEDAHQNELQKMKDDHEKHVL
RLAEELEGNHKIVRDIQRAMLELEGLVERKEKELAQMEGERERLLQEARNSHEQVVQELE
RKLSECSKALQDAVCSREVLANQLDGLQIEMEQKIRREMENAEKNHLQDLEARLKKEHKA
QMEMLKHEKQSTVDALTVENQAKLKELAESYLKERKERESRFKDYEAQICEFVDARCKLE
VEMALKETETEDLRLQYEEAKTQQEEALRAEMESQTAALKEQVEALTRQLQKKNEEHEQG
LAELRALMRLEKDHCISELVERHDEESTLLRYEFSALKQKFQDAEKDCEERLQEIQQQLK
GQIRTLHEEREVERRAFEHKEHDLQTSISDLQAVNTLLSGRLEQERQEARRTLEEQEDKL
KDALLQKEELEARLVGKIQLLETELEERHSADKGAEVGEREGAGIALQQRLDEERASLLG
QLENLEKKKNEELQNLKTSLIAEQQTNFNTVLTREKLKKEQIIAELSEKLKIVMLQQEKD
KSLIETLSEDRATILQEKKHLEEELNRLRSSALVSSAFFVANPVTVVVETPGACGPLPAE
VPLLPSLDSERLGSVAALRDDDRVDSAVDASMMTVYDNAPMLSEEKQRILMLERTLHMKE
EENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFL
HSESLAALDLKPATGATRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKK
M
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgtacgtgttccaggtcaacaacgggagcacgctgacgttcgacacggagcta
gcggtgcagaccgttctggacctcaagcatgcaatccaggcgaagtacaagatcgcggct
cagcaccaggtgctggtggttaacggtggggagtgcatggtggctgagaggagggtgtgt
agctacagcgctggcacggacacaaaccccatctttctgttcaacaaagagatgattctg
tgtgaccgcgcgcccacgatccccaaaaccaccttctcggtggagaacgagatggagatg
aaggtggaggagtcgctcatgatgccggccgtgtttcacaccgtggcttcgcggacgcag
ctcgccgtggaaatgtttgaagtggccaagaagctgtgctccttctgcgagcgcttagtc
cacgacgaacacctgcagcaccagggctgggccgcgatcatggccaacctggacgactgc
acggcgtcctatcagaagctgctttccaagttcgacgtggcctacacgaactaccagcgg
gatttcgaagacatcaagctgaagctgactaagctcgggaccgccgtctcggtcatggcg
aaaatccccctgctggagtgtctgacccgacacagttaccgcgaaagcctggagaaattc
gcgtcaccacatcccagagccgaggatgagccgggagctggacggacctccgtgccgggc
cagggatctcctgcattaggagacaccgtggctcacgatggggggctgcaggaggcgctg
gaggagacagataaggaggatgggccgttgtttaacgtcacgctgctggactggatcaac
gtccaggatcggcccaatgacgtcgaggctgtagtgaggaagtgcttcgattccatcaac
agactcgacccacggatcattcagccgtttctcgacgagtgccgggacacgattaccaag
ctggataatcaaaacatgaaggccatcaagggtctggaggaccgattgtacgcgctcgac
caaatgatcgccagctgcaagaagctagtgaacgaacagaaggagcttgctcagggattt
ttagccaatcagatgcgggctgaaaacctgaaggacaactcggtgctgccggacctgtgc
ctgagtcacgccaatcagctgatgatcatgctgaccaaccaccggaagctgctggacatt
aagcagaagtgcacaaccgccaaacaggaactggccaacaacctgcaagtccgtctgaag
tggtgctgctacgtgatgcttcacgcagatcaggacggcgagaagctgcaagccctgctg
cgtctgctgactgagctgctggagcgggtgcgcgttgtggaggcgctcagtaccgtccca
cagatgtactgcctggccgtggtggaggtggtgcgccggaagatgttcgtcaaacactac
agagagtgggcaaacgccctcgtgaaagacgggaaaaccctctacgaggccgagaaggcc
aaacgggagatgttcggcaagctgttcagaaagtcgttcctcagaaaccggttgttccga
ggactggactcgtggcctccatcgtcgttttgcacaagaaagcctcgcaagtttgacttt
gagcttccggatatttccctgaacgacctgcagtatctgaagagctgctgtcctgctgaa
gtgcaaccttttctcagggttccatcgctatgtgattttgagccgttaaaccatcacaca
gaagctcttcaccacctagtccaagcagcccgtagtgtagacgaaatgtcccagacgata
acggacctactgagcgaactgaagatttccgggagccagtgtgcacagagacctggctcg
gaaagcagagaagagaccacgcccgtctcctcgaaaatcccaccgcctcttattttacag
tctccgcctactcaggtgctctcctttccagctcccttagaagatctgtcccccgacagt
atagatgcccatacgtttgactttgagaccataggacaccccaacatggatccggtgctc
cagcagggctctctggacctggactctttagccgagagcccggagtccgacttcatgtcg
gccgtcaatgagtttgtcatagaagagaatgtgatgtcgcctaatcccatcagtgacccc
acaagtcctgagatgatggtcgagtcgctgtactcctcggtcatcaacgctatagacagc
aaaaggatccaagacacgaccatgctcgaaagagaaaactccagaattatgaccctcaag
ctgaccgtcgacaggtaccgctttgctgccgaggagtcacagggtagcatgaggaaagtt
aaggaggacctctgtcatttccaaggacttgtcttgaaggagcagcgagacttcagcttt
gccctgaaaaatctgagcgcagaaattcacggcatcgtcaacgacgttgcccgtcgtcag
gaagacgcccaccagaatgagctccagaagatgaaagatgatcacgagaagcacgttctc
cggctcgccgaagagctggaaggcaaccacaagattgtccgggacatccagagggcgatg
ctcgaacttgaagggctcgtggagaggaaagagaaagagctggcgcagatggagggcgag
agggagcgcttgctgcaggaggcccgcaacagccacgagcaggtcgttcaggagctggag
cggaaactttccgagtgcagtaaggcactccaagatgctgtgtgttccagagaagtcctt
gccaaccagctggacgggctgcaaatcgagatggagcagaagatacggcgagagatggag
aacgcggagaagaaccatctccaagacttggaagctcgtttgaaaaaggagcacaaagca
caaatggagatgctgaagcatgagaaacaaagcactgtagacgccctaaccgttgaaaac
caagccaagctgaaggaactcgcggagtcgtacctgaaggaacggaaagagcgagagagc
cgcttcaaggattacgaggctcaaatctgcgagttcgtcgacgccaggtgcaaactcgaa
gtggaaatggcgcttaaagagacggaaacggaagacttgcgcctgcagtacgaggaagcc
aagacccagcaggaagaggctcttagggccgagatggagtcacagacagcggcccttaag
gagcaggtggaggctctgacacgacagctgcagaagaagaacgaggagcatgagcagggc
ctcgccgagctgcgcgctctcatgcgcctcgagaaggaccactgcatctcagaactggtg
gagcggcacgatgaggaaagcacgctgctgcgctacgagttctccgcgctcaagcagaag
ttccaggacgcggagaaagactgcgaggagcgcctgcaggagatccagcaacaactgaag
ggacagatccggactttgcacgaagaacgggaggtggagcggagggcattcgagcacaag
gagcacgacttgcaaacctctatcagcgatctgcaggcagtcaacaccctcctgtccggg
cggctggagcaggagcgtcaggaggccaggagaacgctggaggagcaggaggataagctt
aaagacgccttgttgcagaaggaggagctggaagccaggctggttggcaaaattcaacta
cttgaaactgaactcgaggaaagacattccgctgacaaaggagccgaggttggcgaacga
gaaggcgcggggatcgccttgcagcagaggttggatgaagaaagagcgtccctcctgggc
cagctggagaatctcgagaaaaagaagaacgaggagctgcaaaacctgaagacctcgctc
atcgccgagcaacagaccaacttcaacactgtcctgacgcgggagaagctaaagaaggag
cagatcatcgccgagctgagtgagaagctgaagatagtgatgctgcaacaggagaaagat
aagagtttgatcgagactctgtctgaggaccgggccaccatcctgcaggagaagaaacac
ctcgaggaggagctcaaccgactccggagctccgccctggtctcctcagcctttttcgtg
gccaatcccgtcaccgttgttgtggagacgcccggagcgtgtggtcctctcccggccgaa
gttcccctcctgccgtccctggattccgagaggctggggtccgtggccgctcttagagac
gacgaccgggtggactccgccgtagacgcgagcatgatgaccgtctacgataacgcgccg
atgctgtcggaggagaaacagcggatcctgatgttggaaaggaccctgcacatgaaagaa
gaggagaacaagaggctcagccagagactgatgtctcaaagcatgtcctcggtgtcctcg
aggcactcggagaagatcgccattcgagatttccaagttggcgatttggtcctcattatt
ttggacgagcggcacgacaattacgtcctgttcaccgttggaccgacgctctacttcctc
cactcggagtctctcgctgccctggacctcaaaccggccaccggagcgacgagacgacct
tgggtactggggaaggtcatggagaaagaatattgccaggccaaaaaggcccaaaaccgc
ttcaaagttcctctgggcaccaagttctaccgggtaaaagccgtgccatggaataagaag
atgtaa
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integrated database retrieval system
