Silurus meridionalis (southern catfish): 124384059
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Entry
124384059 CDS
T08004
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124384059 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124384059 (cnot3a)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124384059 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124384059 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Lectin_N
Motif
Other DBs
NCBI-GeneID:
124384059
NCBI-ProteinID:
XP_046702544
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Position
4:complement(7705076..7712281)
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AA seq
864 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKHHNAANGNQKDKYEADLKKEIKKLQRLRD
QIKSWVASNEIKDKRQLVENRKLIETQMERFKVVEREAKTKAYSKEGLGLAQKVDPAQKE
KENTEQWLTNSISTLNMQVDQFESEVESLSVQTKKKKGDKGKQDRIEDRKKLIETHRYHI
RMLETILRMLDNDSVQVDAIHKIKDEVDYYVDSSQDPDYKENEFLYDDLDLEEIPMLATS
PQGHNDEEMSTPTSTTSSSPIPPSPATATTEIPEEEKKRGRSADSEVSQSPVKSSNPLSS
FSSSSSSSGFSSSSTSSLVSMAAVVGGTASVSGGNTFLGSFSSAVQQHPHSKLSSSSSSS
SSSSSSSSSSSVPSSSTSSPPSHPNLPSSTTPSVLPTSNSQALTLAVGKAGTAVTSSSMP
GLMPSNMAGIISSSMPTPYAQAAAGSGPTGNNSGAVSTAGGANANTNSTQNSNGTVQMGS
NGGILGLGPAPSAHQGTAQIPISPVGTVPGAGPSMVPGNGGSMASPGGIMGNVAPARPPS
VVKQNGGTNPLAYSAVVADSSSDSSLSSTSLSQNSQPSSTSSSANQILDNGPTLLSSITL
PPTSQSPLFSDSTPGGGSLLNGPHSYTPSTEAIKAPEPLSSLKAMAERAALGSGLDGEIP
PLHLTERDLFSGSSAAPGPPVPPQPAVTEVNLPPTLGACPLGPSPLTKEQLYQQIMQEAA
WAHMPLPSDSERIRQYVMRTPCPLLPFHHHTPPHHCDSIEFYQRLSTETLFFIFYYLEVY
ESSVSVCESPEEAVVEISHEIHDVVPETRGTQDHHGRVRTGNLHLLRLRKMGPEKEGGLH
VRVQVPRGPRPAVTHGYDAKADSE
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaagaaaactccaaggtgaaatagaccggtgtttgaaaaaagtcgctgag
ggggtggaacagtttgaggacatctggcaaaagcatcacaatgcggccaacggcaaccag
aaggataaatacgaggccgaccttaagaaggagatcaaaaagcttcagagactccgagac
cagatcaagtcatgggtggcgtccaacgagatcaaggacaagcggcagctagtggagaac
cggaaactcatagagacgcaaatggagcggtttaaagtggtggagcgcgaggcgaagacg
aaggcgtactctaaagaaggactgggcttggctcagaaggtggatccggcgcagaaggag
aaggagaatacggaacagtggctgacgaactccatatccacgctgaacatgcaggtggat
cagttcgagagcgaggtcgaatccctgtccgtacagacgaagaagaaaaaaggagacaag
gggaagcaggatcgtattgaagatcggaagaagctgatcgagacgcaccggtatcacatc
cgcatgctggagaccatcttacggatgttggacaacgactcggtccaggtcgacgcgatc
cacaagattaaggacgaggtggactactatgtcgactcctcgcaggatcccgactacaag
gagaacgagttcctgtacgacgacctcgacctcgaagaaatcccgatgttggccacgtct
ccgcagggacacaacgacgaagaaatgagcactccgacgtccactacctcgtcctctccg
atcccgccgtctcccgctacggctacgaccgagatccctgaagaggagaagaagcgaggt
cgatctgctgacagcgaagtgagccagtccccggtgaaaagcagcaatcccctgtcttct
ttttcgtcctcttcctcgtcctcaggcttttcctcctcttccacctcgtccctggtttcc
atggcagccgtcgttggggggaccgcgtcggtttccgggggcaacactttcctgggcagt
ttcagcagcgcggtccagcagcatccgcacagcaagctgtcgtcctcgtcgtcctcgtcg
tcttcatcctcctcctcttcctcatcctcctcggtgccatccagcagcacatccagccca
cccagccaccccaatctgccctcttctactaccccttcggtcctgcccacgtctaactcg
caggctctgacgttggctgtgggcaaagcgggcacagcggtgacgagcagcagtatgccg
ggcctgatgcccagcaacatggccgggattatttccagctcgatgccgactccttacgcc
caagcggcagccggcagcggacccacgggaaataacagcggcgccgtttccacggcaggc
ggagctaacgctaacactaattctacgcagaattctaacgggacagtccagatgggctcc
aacgggggcattttaggcctcggaccagcaccgtcagcccaccagggtacagcacagata
cctatcagcccggtgggaacggtgccaggggcaggacccagcatggtccccggaaacggg
ggtagcatggcatcgccagggggcatcatgggtaatgtagcacctgcccgaccgcccagt
gtggtaaaacagaatggaggaacgaaccctctagcgtacagcgccgtggtggcagacagc
agctccgactcgtccctcagcagcaccagcctatcgcagaacagccagccgtcttccacc
agctcctcggccaatcaaattctggacaacgggccgaccctgctgagctcaatcactctg
cctccaacgtctcagtctcctttgttttcagacagcacccccggtggtgggagtttgctc
aacggcccacactcgtatacccccagcacagaggccattaaggctcctgagccactgagc
tctctgaaggccatggctgagcgagcagctctaggttcggggctggacggagaaatccca
ccacttcatctgacggaacgagatttgttttcgggctcctcggccgcccctggccccccg
gttccaccccagcctgcagtcacagaggtaaatctcccacctaccttgggggcgtgtcct
ctaggcccctcacccctcacaaaggagcaactttatcagcagatcatgcaggaggcagca
tgggcacacatgcccctcccgtcagactcggaaaggatcaggcaatacgttatgaggacc
ccatgccctcttttgccctttcaccatcacactcctcctcaccactgcgacagcatcgag
ttctaccagagactctccaccgagacgctcttcttcatcttctattacctggaggtgtac
gaaagctcagtatctgtctgcgaaagccctgaagaagcagtcgtggagatttcacacgaa
atacatgatgtggttccagagacacgaggaacccaagaccatcacggacgagttcgaaca
gggaacctacatttacttcgactacgaaaaatggggccagagaaagaaggagggcttcac
gttcgagtacaggtacctagaggaccgagacctgcagtgacacacggatacgacgcaaaa
gcagacagtgagtga
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