Silurus meridionalis (southern catfish): 124384139
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Entry
124384139 CDS
T08004
Symbol
lingo4b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4b isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384139 (lingo4b)
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
124384139 (lingo4b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
I-set
LRR_4
Ig_3
LRR_1
ig
LRR_LRWD1
Ig_2
LRR_9
LRR_EndoS
LRR_Zer-1
LRR_RPS2
V-set
LRR_6
C2-set_3
LRRNT
C2-set_2
Motif
Other DBs
NCBI-GeneID:
124384139
NCBI-ProteinID:
XP_046702684
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All DBs
Position
4:complement(19272191..19294107)
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AA seq
622 aa
AA seq
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MGTISGQALVIQAGVKMFVPCHQKLVSAFLLLYCLHLSAFDFLWPCPQKCICRQDTLEVN
CSSKHLTVVPEGLHISARRLNLSGNRLKTLIRRQFYGLTQLEELDLSGNIISMIEVEAFQ
GLKYLRILKIKNNRLKIIPVGVFSGLSSLLSLDISKNEILVFLDYTFQEMVNLRELNAGE
NDLVFISQRAFVGLQSLQELNVDHSNLTSIPTDAFSQLQSLSKLRLRRLNINVLPNYAFR
RLHQLRTLQILQWPSLETLNSNSLVNLNITSLVISNCNLSAIPYASLRHLTHLIYLDLSY
NPITSIESNKLGELLRLQEFHLVGGKLLRIEPGAFRCLAHFKLLNVSSNRLTTLEESAFH
AVGNLQILRLDRNPLTCDCRLLWVMRRRFRLNFDGRQPTCSAHERGRRREFRDFSEAEFS
KVFICRQAGILERKLQDVMVDEGTNVQFECKVDGYPQPSITWLSPQQTPFSSVGRIRVHA
NGTLEVRYAQVQDTGTYLCIASNAAGNDNISASLHVRSSSRNYTPPNFFDESLVETSLPP
STNSSAQLSSPFPFDAKTIVIATTMGFLSFLSSVVICFVFMFLWSQSKGQIKHTATIDFV
PRSSMGGGGEGGDTGRFTMKLI
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggggaccatcagtggacaggcactggttatacaggcaggagttaagatgtttgtgccg
tgtcatcagaagttggtctcagcattcttgctactctactgtttgcacttatcagcgttt
gatttcctgtggccatgtcctcaaaagtgcatttgtcggcaggacacactagaggtgaac
tgctcttcaaaacacttaacagttgttccagaaggattgcacatcagtgccaggcggctg
aacctttctggcaaccgcttgaagacactgattcggcgacagttctatggattaacgcaa
ctagaggagctggaccttagtgggaacattatctccatgattgaagtggaagcattccag
ggtctgaaatacctaaggattttaaaaataaaaaacaaccggcttaagatcatcccagtt
ggtgtcttctctggtctgtcaagccttctcagcctggacattagcaagaatgagatactt
gtgtttctggactacacatttcaggagatggtgaacctacgggaactaaatgcaggggaa
aatgacctggtgtttatttcacagagggcctttgttggtctgcagagcttacaggagctg
aatgtagaccacagtaaccttacttctattcctactgatgcattttcacaactccaaagc
ctaagcaaactgcgcctaaggagactaaacattaatgtgttgcccaactatgcctttcgt
cggctgcaccagctgcgtacactgcagatacttcagtggccctcattagagacgttaaac
agcaacagccttgtgaatctaaatatcaccagcttggttatcagtaactgcaatctgagt
gccataccatatgcctcattgcgccatttaacacacctgatctacttagatctgtcctac
aaccctattacatctatagagagtaataagctaggagaattgctcagacttcaggaattc
cacttggtgggtgggaaactgctccgcattgagccaggtgcctttagatgcctggctcac
tttaagctgctcaatgtatcttcaaaccgacttactacccttgaagaaagtgccttccat
gcagtcgggaacttacagatcttgcgactggacaggaacccacttacttgtgactgtcgg
ctactgtgggtgatgcgacgtcgttttaggttaaactttgatggtcgccagcctacatgt
tctgcccatgaacgcggtcggaggcgggagtttcgtgacttttcagaggcagagttttcc
aaagtgtttatctgcagacaggcaggtatccttgaacgtaagctacaagacgtaatggtg
gatgagggaacaaatgttcagtttgaatgcaaagtagatggctatccccaacccagtata
acttggttatcaccccagcagactccattcagctctgtggggagaatacgggtgcatgca
aatggaactctggaagtgcgttatgcccaagtgcaggacactggaacttacctatgcatt
gcatctaacgcagcaggaaatgataatatctctgccagtcttcatgtgaggagctcctct
cgaaactacacacctcctaatttctttgatgagagtttggttgaaacctcattgcctcct
tctaccaactcatcagcacagctgtcgagcccttttccctttgatgccaagactattgtc
attgctaccactatggggtttctttcttttctaagctcagtggtcatttgttttgtgttc
atgtttctttggagccaaagtaagggccagattaagcacacagccaccattgactttgtg
ccacgttcatctatgggaggaggtggagaaggtggagacacggggaggtttacaatgaag
cttatatga
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