KEGG   Silurus meridionalis (southern catfish): 124384178
Entry
124384178         CDS       T08004                                 
Symbol
mdc1
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
smeo  Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smeo03400]
    124384178 (mdc1)
DNA repair and recombination proteins [BR:smeo03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    124384178 (mdc1)
SSDB
Motif
Pfam: BRCT_2 BRCT RTT107_BRCT_5 FHA BRCT_3 PTCB-BRCT
Other DBs
NCBI-GeneID: 124384178
NCBI-ProteinID: XP_046702778
LinkDB
Position
4:11996606..12009009
AA seq 2064 aa
MDATQQIEDSFFGEEDNSDHEHDLEEGKRQRKPLALLKVLKNNHVPETEVPLYQGENVLG
RDPTSCSVPIEARSISSRHAVISVSTFGANDPRGHNEATEALLWDLGSLNGTRKGRLKLT
PHVRYALTEGDGVVLADLPCQYVVLNNAERSTVTSAADGGRGKAKGQTSGCSGSKGVENG
SKKNNALPPVPVWPVEAKSPSSTTPKKPERTLVPESESDSDGEKHTRRDRRRIVDSDSAS
SDFSSPTCSTFLTPANKVIPESEDESSITPSPALQGRLVKTENDPEVSADSSKPDPLLFN
IDSDSDVEDEDVEAAKVTPGTEAAPPSGAGAKNPVGLHMDSDTDVEEDLMEKDKKDPNVL
AAPVKQDSVNPAALNMDSDTDVEEDELVKTDTTEKKETASSGQFHLESDTDVEEDVMEKD
KKDPNVLAAPVKQDSVNPAALNMDSDTDVEEDEPVKTDTTEKKETAVLQFHLESDTGVEE
DVMEKDKNDPKILEAPVVQDSVNPAALNMDSDTDIEEDEPVKTDTIDKKKTANSGQFHLE
SDTDVEDEDVPHIQDSRPKLSHVAELNMNSDTDVEEEEVKGTGKAKEPPLDDMTDGKDGR
ILGHQSDSDTDVEDDVTEIRTPAAAKETGSSQTRSDIQNASERSTDARHESPVQAQHPAE
TVQEEFRLDSDTDVEEDEEKTEEKEQKSATEAAVVHIVHSSTPRGAGLSEEMEMEAFLSP
TQLFKRPVLPSLLHPSVSPGALGHSDDEFAVAETQSFVCDAAQADATLDETPPSPVSVES
RRSDGASSFQLGLSDSSHQLPEAREHNREPAEDDWQLQATQLYAMKNSEDSTKAGQTQPD
LDATQAYTDVTEIDEEEDVGKKEGKGEQDTHTAEKVLIKHSAWKDENSDVVVSEPEKTTE
EDEEMRVDSHLSTADTLLIVRSPRQEEQTQAGVFLAAQSKKEQEETETVEHGSRDKELQE
TEKARNESAELKNDEGQAKKEKSEVIRVGPEEEPLQIDDLAQVAVAGTLPMSEEEDEEDE
EQPIETSSNRGTHSAKVDLAYVAVAETLPMCEDEDGEDEEQPIETSSNRGTHSAKVDLAY
VAVAETLPMCEEEDGEELIEPSSKRPKQPAKVESTQPLELDDLTHVAVAKTLPMCEVEEG
KDEEQLAEPSSSRPMQPAEVESTQPLELEDLTHVATAETLPMCKEEEQIKPSRRPGRRRP
PAGAVPKQSIKSDQEDKEGQEGDQKSEATFTRRSSMRRIGAKAKPVESRTTIPETLPMNE
EEEEQEEKGLSETKPGRKSSRRRTTSKPESTQPLKPETVKMDEEEGEQDSKRCLRGKGRA
ASGKGKPVGKKGKREKGEQDSGSEAEEDRGNKGRRRKDLRQKSKDDDEARITESEEIEHL
KRQEEEEERKILQRKKEEEEAREREEREESMRLEKEREEREEREKREQEKRIDXKRENRE
EKKEEEEIKAREEKERVKEKQLEKERREQEEKERQEQERMEREKWKGKKRKARKEKRERQ
ALEEELERERKNEKXREDRERKRESEERTARERNEGREGKTGKGNGTEEEGKESKDNEKG
MEKEEGQAPGKRKTWLGRKGKKSIKGEEQKLEEGTEERVETDQDFSEKQKQEDKTVSGKK
REDEQPESDAKPRRGRRTTRKSVAPPADVEDEGGPAKRTRSRSNSSNSVCSEQSTQDSLS
EGRKRWGRRKTAEEVNEKSSVSGRRTCTAPSREREDTKQAARSRSNSRSSERSSSSVGTR
SQGRGGKRRKTLKAEEQEGKEVEVGKQSAAVGRGRGRGRARGGKHPGPNVIKAETAGELE
EPKPEVPAVSKDSVTSPSSSRGRKRGTDVLVLTPETPQPTPKTPRRSITGPTHKVLFTGV
VDEDGEKVVTRLGGSLAKGVGDMTHLVTDKVRRTVKFLCAVARGVPIVTPDWLRKCGKAG
SFLSPNGFLVKDVEQEKRFNFSLQDALRAASSQTLLQGYEIHVTPSVKPEPAQMKEIITC
CGARFLPKMPSAHKAQTIVVVSCEEDRALCERARSLALPVVSAEFLLTGILQQKADVQTH
ALSLSPAAAAAAAQTKPAARSRGK
NT seq 6195 nt   +upstreamnt  +downstreamnt
atggacgccacccagcagatcgaggactccttcttcggagaggaggataactctgatcat
gagcatgacctggaagaaggaaaaaggcaaagaaagccattggctttactgaaagtttta
aaaaacaaccacgttccagagacagaggtgcctctctaccaaggagagaatgttttagga
agagatcctacatcgtgctctgtgccgatcgaagcccgttccatatccagccgtcatgcc
gtcatctccgtttccacgttcggtgctaacgaccctcgtggtcacaatgaagctacagaa
gccctgctgtgggacctgggcagcttaaacggcaccaggaagggtcggcttaaactgacc
ccacacgtacgctatgcgctgactgaaggagacggcgtggtgctcgccgatctgccctgc
cagtacgtcgtcttaaacaacgcagaaaggagcacggttacgtccgcagctgacggaggg
agagggaaagcgaagggtcagacgtccggttgcagcggctccaaaggagtggagaacggt
tcgaagaagaataatgcgctacctcctgttccagtgtggcctgttgaagcgaaaagtccg
tcgtcgacgacccctaagaagccagagaggaccctggtgcctgagtcggaatcagattct
gatggcgagaagcatacaagaagagacaggaggaggattgtggactccgactctgcgtct
tctgatttttccagcccaacatgttcgacattcctgactccagcaaacaaagtcattcca
gagagtgaagatgagagctccattactccatccccagcactgcaggggagacttgtaaag
actgagaacgaccctgaagtctctgcagactcctcgaaacctgacccgctcctcttcaac
atagacagcgattcggacgttgaggacgaagacgttgaagcggcaaaagtgacgccggga
accgaggctgctcccccatctggagcgggcgctaaaaatcctgtcggtctgcacatggac
agcgacaccgatgtagaggaggacttaatggaaaaagacaaaaaggatcccaatgttttg
gcggcacccgtgaaacaggactctgtaaatccggccgcactgaacatggacagcgatacc
gacgtagaggaggacgagctggttaaaacagacaccacggagaagaaagaaactgcgagt
tctggccagttccacttagagagcgacaccgacgtagaggaggacgtaatggaaaaagac
aaaaaggatcccaatgttttggcggcacccgtgaaacaggactctgtaaatccggccgca
ctgaacatggacagcgataccgacgtagaggaggacgagccggttaaaacagacaccacg
gagaagaaagaaactgcggttctgcagttccacttagagagcgacaccggcgtagaggag
gacgtaatggaaaaagacaaaaacgatcccaaaattttggaggcacccgtggtacaggac
tcggtaaatccggctgcactgaacatggacagcgataccgacatagaggaggacgagccg
gttaaaacagacaccattgacaagaaaaaaactgccaattctggccagttccacttagag
agcgacaccgatgtagaggacgaggatgtccctcatatccaagattcccgacccaaactg
agtcacgtggcggagctcaacatgaacagcgacactgatgtagaagaagaggaggttaaa
gggacaggaaaagctaaggagccaccattagacgacatgacagatggcaaagacggcaga
attttaggtcatcagtcagacagcgatacagatgtggaggatgatgtcactgagatcaga
actcctgctgcagccaaggaaacaggaagctctcagacacgttcagatatccagaacgct
agtgaacgcagcacagacgcacgacacgagagtcctgttcaagcccagcatcctgctgaa
acagtgcaggaggagttcagactggacagcgacacagacgtggaggaggatgaagagaag
accgaggagaaagaacagaagtcagcaacagaagctgcagtcgtacacattgtccattcg
tctacaccaagaggagcaggcttgtctgaggagatggaaatggaagcattcctcagtcca
actcagctgttcaaacggccggttctcccctctctgcttcacccgtccgtctctcctgga
gcgctcggtcacagtgatgatgaatttgctgtggctgaaactcagtcctttgtgtgtgat
gctgctcaagctgacgctactctcgacgagacgccgccgtcgccggttagtgtggaatcg
cggcgctcagacggagcctcgtccttccagctgggcctatcagacagcagccatcaactg
ccagaagctcgagagcataaccgggaacctgcagaggacgactggcagctgcaggcaact
cagttatacgcgatgaaaaattcagaagacagtactaaagctgggcaaacgcagccggat
ctggatgctacgcaggcttacaccgatgtgacggaaatagatgaggaggaagatgttgga
aaaaaagagggaaaaggagaacaagacactcatactgctgaaaaagtgctcatcaaacac
agcgcgtggaaagacgagaacagtgacgtcgtcgttagtgaaccggaaaaaacgacggaa
gaggatgaagagatgcgagtggattcgcatctctccactgcagacactctgctgatcgtc
aggagcccgaggcaggaggagcagactcaagccggcgtcttcctcgcagcccaaagtaaa
aaagaacaggaggagacagagactgtggaacatgggagcagggataaggagctgcaagag
acagagaaggctcgaaatgaaagtgcggagctgaagaatgatgaagggcaagcgaagaaa
gagaagagtgaagtaattagagttggaccagaagaggagcctctccagattgatgatctc
gctcaggttgctgttgccggaacgctgcctatgagtgaggaagaagatgaagaggatgag
gagcaaccgattgaaacaagctcaaacagaggaacccattctgctaaggttgacctcgct
tatgttgctgttgctgaaacgctgcctatgtgtgaggatgaagatggagaggatgaagag
caaccgattgaaacaagctcaaacagaggaacccattctgctaaggttgacctcgcttat
gttgctgttgctgaaacgctgcctatgtgtgaggaagaagatggagaggagctgattgaa
cctagctctaaaagaccaaagcagcctgctaaggttgaatcaacacaacctcttgagctt
gatgatctcactcatgttgctgttgccaaaacgcttcctatgtgtgaggtagaagaggga
aaggacgaagagcagctggctgaaccgagctccagcagaccaatgcagcctgctgaggtt
gaatcaacacagcctcttgagcttgaagatctcactcatgttgctacagccgaaacactg
cctatgtgtaaggaagaagagcagattaaacctagcagacgccctggcaggaggagaccg
cctgctggtgctgtgccaaaacagagcatcaagtctgatcaggaggataaagaggggcaa
gagggagaccaaaagagtgaagcaacatttactaggaggtccagtatgaggagaatcggt
gcgaaggcgaagccggttgagtcgcgcactaccattcctgaaaccctaccgatgaatgaa
gaagaggaggaacaggaggaaaagggactgagtgaaaccaaacccggtagaaaatctagc
cgaagaagaacgacctctaaacctgagtctacacaacctctcaagcctgaaactgtgaag
atggatgaagaagagggcgagcaagactctaaaaggtgcctgagaggaaaaggaagagca
gcatctggaaagggtaaacccgttgggaagaagggaaagcgagagaaaggagagcaagat
tcaggcagtgaagcggaggaggacagagggaataaaggaagacgacgaaaggatctgagg
cagaaatctaaagatgatgacgaggccagaatcacagaaagcgaagaaatcgaacattta
aaaaggcaagaggaagaggaggaaagaaagatactgcagaggaagaaggaggaagaggaa
gctagagagagggaggaaagagaagagagcatgagactggagaaggaaagggaggagaga
gaagaacgtgaaaagagggagcaggagaaaaggatagattgaaaaagagagaatagagag
gagaagaaggaagaggaagagataaaagcaagggaggagaaggaaagggtcaaggagaag
cagctggaaaaggaaaggagagagcaagaagagaaagaaaggcaggaacaagagaggatg
gaaagagaaaaatggaaagggaagaaaagaaaagctagaaaagaaaagagagaaagacaa
gcgcttgaggaagagcttgaaagagaacggaaaaacgagaagnnaagagaggatcgcgag
agaaaaagggagagtgaagagagaacagcaagagaaagaaatgagggaagagaaggaaaa
acaggaaaaggaaatggaacagaggaagaaggaaaagagagcaaagacaatgagaagggt
atggaaaaagaagagggacaagcaccaggaaaacggaaaacatggctaggaagaaagggg
aaaaaaagcataaaaggggaggagcaaaaattagaagaaggaactgaggaaagagtggag
actgatcaagatttcagtgagaaacaaaaacaagaagataaaacagtgagcggtaaaaag
cgagaggatgaacaacccgagagtgacgcaaaacccagacgaggccgacgcaccaccaga
aaatctgttgcgccccctgctgacgtggaggacgaaggcggtccggctaaaagaactcgt
tcgcgctctaactcctcaaactctgtctgctcggagcagtccactcaggatagcctgagc
gaaggaagaaaaagatggggaaggagaaaaactgctgaagaggtgaatgagaaaagcagt
gtatcaggcagaagaacatgcacagcgccctctagagagagggaggacacaaaacaggct
gctcgttctcgctccaactccaggagctccgaacgatccagcagcagcgtaggcactcgg
agccaaggcagaggagggaaaaggaggaaaactttaaaagctgaggagcaggaaggaaag
gaggtggaagtgggaaaacagtcagcagctgtagggagaggaagaggacgtggaagagca
cgaggtgggaaacatcccggtccaaatgtcataaaagcggagactgctggtgagctcgag
gagcctaaacccgaggtcccagccgtttccaaggacagtgttacgagcccgagcagcagc
agggggcgtaaaagaggtactgatgttttagtgctgacgccagaaactcctcagccgact
cctaaaacccctaggcgctctataaccggaccgacacacaaggttctatttacaggagta
gtggatgaggacggggaaaaggtggtgacgcgtctgggtggaagcctggccaaaggcgta
ggcgatatgacccacctagtgacggataaagtccgtcggaccgtgaagtttctgtgcgcc
gtggccagaggagtgccgatcgtaacccctgattggctgagaaagtgtggtaaagccgga
agcttcctctcacctaatggattcctagtaaaagatgtagagcaggagaagagatttaac
ttcagtctacaagatgctctaagagcagccagctctcagactttattgcagggctatgaa
atccatgtaacgccctctgtgaaacccgaaccggctcagatgaaagaaatcatcacctgc
tgtggggcacgctttcttcccaaaatgccctccgcccacaaggctcagaccatagtggtg
gtgtcgtgtgaagaggatcgggcgttgtgcgaaagagctcggagtttggctcttcccgtg
gtcagcgccgagttcctgctgaccggcatcctgcagcaaaaagcagacgtccaaacacac
gcgctgtctctttcgcctgctgctgctgctgctgctgcgcagacaaaacctgctgcacgc
agccggggaaagtag

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