Silurus meridionalis (southern catfish): 124384192
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Entry
124384192 CDS
T08004
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124384192 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124384192 (arid1aa)
03021 Transcription machinery [BR:
smeo03021
]
124384192 (arid1aa)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124384192 (arid1aa)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Helix-turn-helix
ARID
124384192 (arid1aa)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124384192 (arid1aa)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124384192 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
124384192
NCBI-ProteinID:
XP_046702808
LinkDB
All DBs
Position
4:complement(24838588..24861989)
Genome browser
AA seq
2261 aa
AA seq
DB search
MAAQVASATSLNSSPPSELKKADRDPKEESVPVEKQQENKDPGSEIGSPGRGELHERPEP
GNATGGGGGGGESEMKNGNGNPPRLANNQNDPAGPEANSHTGMAHQHHGSGFAPPSYGYA
HHYTRGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHDHGFQNHQFNSYGQFPNRAPYPSP
GYAMNSPRSAPTQAAKQQQQQQPAGGSPTMAASYNNQRYNIANPQATSTPTLNQLLTSPS
SSRGYANYPPSDYNNQEGANKGAADINAAAQYGGGHPGWQQRSHHPPPMSPGSTAQTLGR
TQTPGTMDQMGKMRAQPYGGGSPYSQQPHQGPPGGQQGPAYPGQSYGPPGPQRYPMGMQS
RMQYGQQMAYGQQGPGGYGQQGQQPYYSQQGPGTLPGQQQSPYPHPSQPSAPHVQGGHPY
PQPHMPQQSQGPLGAPPSGPSQSQPAYSQPPTPQSTQSPYPQQQTPQSQPSSQGASQAPP
ASQAPSNYTHSQAAQQPPSQQTPQAPTPASQQPTVQGQPSSYSQNPSQQQQQSSYQRFPP
PPQEISQESFSSQSSATASSQPVASTKSSSEDMQGRPSSLPDLSGSIDDLPTGTEGALSP
GVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATASRSGPLSPAAM
PGNQMPPRPPSGQSDAILHPGMNQPGMGQERGFMQRNQMPPYGSPQSGSALSPRQSSGGQ
MHGGMGPFQQNNTMGSYGPQGGQYGPQGYQRQPGYSGMPNANYPGPGMGGSINPMSGQGG
GPPFTGMPPTRMPHGQMGGRPYGPNMGPNMGPNMGPNMGPNMGNMPPQVGSAMCPPPGLN
RKPQEASAAMQHGSTNSIHNRMPGYPNMSPGMMGSGPSYGPSMNNMPGMINTQGPPFPMG
GNMPNNSSGMSPGPEFGMDGKLNQTPKMNNKAEGTPKTDSKSKKSSSSTTTNEKITRLYE
LGSEPERKMWVDRYLAFIEEKAMGMSNLPAVGRRPLDLFRLYMSVKEIGGLTQVNKNKKW
RELATSLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIMSADNKKNQAKVQPPS
PAGSGSLQGPQTPQSTSSSMAESGDLKPPTPASTPHSQMPSMQSGRSSVNLQDPFADSND
PAFSRRNTMTPNSGYQSGMSTPEMPSRMAPYEPNKDPFSGMRKVGEPFMAGGQGPNSNLG
EQFNRGSGGPIGNMPMGQRQQYPYGTSYERRPESGMGPENNMGPGVPQPNLIPSNTDTGM
YSPNRYPSQQQRHDSYGNQYPGQGAPPGGSYPNQQPGMFPQQQTNYKRPGEGGYPPAKRH
HDGEMYGGPFGGQQPQQQPQAPPNAPSSAQPEIYNQFSSSYPGPERRPPGPQNQFPFPFG
RDRMQPGSGPNSQGSMPPQMMGSSMQSGPDGPQAGMWQGRGEMGYPNYPNRQGPLGGPTQ
GPGYHGINRSEEMISSEQRMNHEGQWPGPRQPAYSPAGAGPPMSRPMQSNYPSPQAMQNH
IPQVSSPTPMPRQMESRTSPSKSPYMHSNIKMQKAGPPVPASHIIPSPVQPPMMRRDPPF
PPGSVEATQPVLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSI
SNFNLIQLSGFLELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALKEGVNGEDEEE
PAIMGMDEDGETDEEGEGEENSSQQRVDCVSTVQPQIKTEKKVGESKKDDDGKVVENILP
TELKTEAPPLDLCVTQERPKQASKFDKLPLKVVKKKDPFVVDCSSKLGRLQEFDSGLVHW
SIGGGDTTEHIQTHFESKIDLLRSGTRTQSAQTCRRKKALEKMESEGTVIPSCSVEQRKD
EEQRQPQQSSTRQLTDGVSEEKEEKPVIVQESSVEPVSQKEEEEPEGSSQEASKLTLPNI
SSSQSQHSVTVLEDEPHSKDEAPLITLSDWQDSLARRCVCVSNIVRSLSFVPGNDLEMSK
HPGLLLLLGRLVLLHHHHPERKQAPLTYEKEEEADKEIGQKDEWWWDCLELLRENCLVTL
ANISGQLDFSIYSESICLPLLDGLLHWAVCPSAEAQDPFPTLGLNAALSPQRLVLETLSK
LSIQDNNVDLILATPPFSRLEKLFGNLVRLVGDRKVPVCREMAVVLLANLAQGDSLAARA
IAVQKGSIGNLLGFLEDSLAATQFQQSQGSLLHMQGAHFEPTSVDMMRRAARALHALAKV
EENHSEFTLYESRLLDLSVSPLMNSSVSHVICDVLFLIGQS
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacagcagcccgccttccgagctgaaa
aaagcggaccgagacccaaaggaggagtcggtaccggtggagaagcagcaggaaaataag
gatccgggatcagaaatcggatcaccgggccgcggcgagctgcatgagcggcccgagcct
ggcaatgctacgggaggagggggaggaggaggggagtccgagatgaagaacggcaacggc
aatcctccgcggctcgccaataatcaaaatgatcccgctggacctgaggcgaacagccac
acgggcatggcccatcagcaccacggttccggtttcgcgccgccgtcctacggctacgct
caccactacacacggggcccttttcatcaacatggcggacaacaaagccctggcatggca
gccgcggcgcccagcaacatgatggagccgtatggaccgaactcgcacgaccacggcttt
cagaaccatcagtttaacagctacggacaatttccgaaccgagcgccgtatccgagcccg
ggctacgccatgaactcgccgcgcagcgctccgactcaggcggctaagcagcagcaacag
cagcagccagcgggaggatctccgaccatggccgcgtcctacaataatcagcgttataac
attgcaaatccacaggccacgtccacaccgaccctaaatcaactcctaacctcgccgagc
tccagccgcggatacgccaattacccgccgagcgactacaacaaccaggaaggcgctaac
aagggagccgcggatatcaatgctgctgcccagtatggaggcggccatccgggctggcaa
caaaggagccatcacccgccacccatgagcccgggaagtactgctcaaaccctcggtaga
acccagactccgggcactatggatcagatggggaagatgcgagcccagccatatggaggg
ggcagtccatattcccagcagccccatcaaggacctccaggagggcaacagggtcctgca
tatccaggccagagttatggccctcctggccctcagagataccctatgggcatgcagagt
cgcatgcagtatggccagcagatggcatacgggcagcagggaccaggtggttatgggcag
caggggcaacagccttattacagtcaacagggcccaggcactctccctggtcagcaacag
tcaccgtaccctcacccttcacagccgtctgcccctcatgtacagggtggccatccatac
ccacagccccacatgcctcagcaatcccaggggccattaggtgcacctccatcagggcct
tcccaatcacagcctgcctattctcagcctcctacgccacagtccactcagtccccatac
cctcaacagcagacaccccagtcccagccttcttcacagggagcctctcaggctcctcca
gcatcacaggccccgtccaactatactcacagccaagcagcccaacaaccaccatcacag
cagaccccgcaagcacctacgccagcctcgcagcaacccacagtgcaggggcagccatct
tcatactcccagaatccttcacagcagcagcagcagtcttcttatcagcgttttcctcct
cctcctcaggagatttcccaggaatcctttagctcacagtccagtgctactgcctccagt
cagcctgtggcctcaactaagagctcctctgaggacatgcagggacgaccctccagtctc
cccgatctgtctggctctattgatgacctgcctactggtacagagggagctctcagccct
ggcgttagtacatcaggtgtatctagcagtcagggcgagcagagcaatccagcacagtct
cctttttcccctcacacctcccctcatctgccaggcattcgcggcccatcaccctctcct
gttggctcacctgctagtgccacagcatctcgctccggacctctttctccagcagccatg
ccaggaaaccagatgcctcctcggccccctagtggtcagtctgatgccattttgcatcct
ggtatgaatcagcctggcatggggcaggaaagaggattcatgcaaaggaaccaaatgcca
ccttatggctctccccagtctggctctgcattgtcacctcgccaatcgtctggaggtcag
atgcatggcggaatgggaccttttcagcagaataacacaatgggcagctatgggcctcag
ggtggccaatatggcccacagggttaccaaaggcaaccaggttacagtggcatgcccaat
gccaactacccaggccctggcatgggaggatctataaatcctatgtctggccagggagga
ggaccaccttttactggaatgccacctactaggatgccacatggacagatgggtgggcgt
ccttatggacccaacatggggcccaacatggggcccaacatggggcccaacatggggcct
aacatgggcaatatgcccccacaggttggttctgctatgtgccctccaccaggcctcaac
aggaagccacaggaagcatcagctgccatgcagcatggatctaccaattctatacacaac
aggatgccgggttaccccaacatgtctcctggtatgatgggctcaggaccttcatatggg
ccctccatgaacaatatgccaggaatgatcaacacccagggaccccccttccctatgggt
ggaaacatgccaaacaacagcagtggtatgtcccctggtccagaatttggcatggatggg
aaactcaaccagacaccaaaaatgaataacaaggctgaagggacgcccaagacggactcc
aaatccaagaagtcaagctcatctacaacaaccaatgaaaagatcactcgtctgtacgag
cttggttctgagcctgaacgaaagatgtgggtggaccgttacctagcattcattgaagag
aaggcaatgggcatgagcaacctgcctgctgtgggccgcagaccccttgatctcttccgc
ctctacatgtctgtcaaagaaattggaggtcttacacaggtcaacaagaataaaaagtgg
cgagagcttgccaccagtctaaatgttggcacatccagcagtgcagctagctcgctaaag
aagcagtatatccaatgtctgtatgcttttgaatgcaagattgagcgtggagaagatcca
ccacctgacatcatgtctgcagacaataagaagaatcaggctaaggtccagccaccctct
ccagctggatctggttctctgcagggacctcagaccccccagtccacaagcagctcaatg
gctgagagtggggatttgaagcctcctactcctgcttctaccccacacagccagatgccc
tcaatgcaaagtggcaggagcagtgtgaatctccaggatccatttgctgatagcaatgac
ccagccttttctaggagaaacaccatgactcccaactcgggttaccaatctggcatgagc
actccggagatgcctagccgcatggctccctatgagcccaacaaggacccatttagtggc
atgcgtaaagttggggagcctttcatggctggtggacagggtcccaacagcaaccttggt
gagcagtttaaccgtggatcaggaggtccaattgggaatatgccaatgggacagaggcag
cagtatccatatggaacaagctatgagagaaggccagaatcagggatgggcccagaaaac
aatatgggacctggagtaccacaaccaaacctgattccttccaacaccgacactgggatg
tactcaccgaatcgctacccatcgcagcaacaacggcatgattcctatggtaatcagtat
cctgggcagggtgcgcctcctggtggttcgtacccgaatcagcaaccaggaatgtttcca
cagcaacagactaactacaaaagaccaggggagggaggctaccctcctgcaaagcgccat
catgatggtgagatgtatggtgggccatttggtggtcagcaaccacaacagcagcctcag
gcacctcctaatgctccatcttcagctcagccagaaatatacaaccagttcagcagctct
taccctggaccagagcgacggcctccgggaccacaaaaccagttccctttcccttttgga
agggatcgcatgcagcctggttcaggccccaactctcaagggtccatgccacctcagatg
atgggaagctccatgcagtcaggtcctgatggccctcaggccggcatgtggcagggcaga
ggtgagatgggctaccctaactatccaaacagacaaggaccccttggtggacccactcaa
ggccctggatatcacggcataaacagatccgaagaaatgatctcatctgaacagcgtatg
aatcatgaaggacagtggccagggccaaggcagcctgcgtacagccctgcaggggctggg
ccaccaatgagtcgccccatgcaatccaactacccgtctccccaagccatgcagaaccac
attccacaggtgtccagccccactcccatgcccaggcaaatggagagcaggacatcacca
agtaaatctccctacatgcacagcaacatcaagatgcagaaggcaggtccaccagtgcct
gcatctcacatcatcccttcacctgtacagccaccaatgatgaggagagatccaccgttt
cctccagggtctgtagaggccacgcaacctgtactcaagccacgtaggcgactcacaatg
aaagaaattggcacaccagaggcatggcgagttatgatgtcactaaaatcgggcttgtta
gcagagagcacatgggctttagacactatcaacatcctgctgtatgatgacaacagtatc
tccaattttaatcttattcagctctctggattcctggaactaatagtggagtattttagg
cgttgtctcattgagatctttggcattctgagggagtatgaagttggtgatccaggacag
agaacccttctggaccccaatgctctcaaagaaggagtgaatggtgaggatgaagaggag
ccagctataatgggaatggatgaagatggtgaaacagatgaggagggtgaaggagaggag
aactcatcacagcagcgtgtggattgcgtgtccacagtgcagcctcagataaagactgag
aagaaggtgggcgaatcaaagaaagatgatgatggcaaagtggtggaaaatattttacct
acagagctgaaaacagaagcaccccctttagatctttgtgtgactcaggagaggccaaaa
caggccagcaagtttgacaaacttcccttaaaagtggtgaaaaagaaggatccatttgtg
gtagactgctctagcaaacttgggcggcttcaagagtttgacagtggtctggtgcactgg
agtatcggtggaggtgatactacagagcatattcagactcattttgagagcaagattgat
ttgctgcgttcaggaactcggacacagtctgcccaaacatgtagaaggaaaaaagcatta
gaaaagatggaaagtgaggggactgtaatcccctcatgtagtgtggagcaaaggaaagat
gaggagcagagacaaccacagcaatcgtctaccagacagttgactgatggtgtttcagaa
gaaaaggaggagaaacctgtcattgtccaagagtcttcagtggaaccagtgtcacaaaaa
gaggaagaagaaccagaaggatcaagtcaggaggccagcaagctgactctccccaacatc
agttcttcacagagtcagcactctgttactgttctcgaggatgaacctcacagcaaggac
gaagccccactaattacgctttcagactggcaggactcgctcgcccgccgctgtgtctgt
gtttccaacatagtccgcagtctttcatttgttcctggcaatgacttggagatgtccaaa
catccagggctgctgctgctattgggccgccttgtgctgctgcatcaccatcatcctgag
cgtaaacaggcccctttaacatatgagaaggaggaagaagccgacaaggaaatcggccag
aaggacgaatggtggtgggactgtctggagctgctgcgagagaactgcttggtcacactg
gctaacatttcaggtcagcttgacttttccatctactctgagagcatctgcttgcctctg
cttgatggcttgctccactgggctgtgtgtccgtctgcagaagcccaggatcccttccct
actctcgggcttaatgcagctttatcccctcagagactggttctagaaaccctcagcaaa
ctcagtatccaagacaataacgtggaccttattctggcaacacctcccttcagtcgacta
gagaagctttttgggaaccttgtacgtctggtcggtgatcgaaaggttcctgtatgccgg
gagatggcagttgtgcttttggccaaccttgcccagggcgacagccttgcagcccgtgcc
attgcggtacaaaaaggcagtatagggaaccttttgggctttcttgaggacagtttagca
gctacacagttccaacagagccaagggtctctgctgcacatgcagggggcgcactttgaa
cctacaagtgtggacatgatgcgtcgggctgctcgggctctacatgccctcgctaaggta
gaggagaaccactcagagtttacactctatgagtcgcggctactggacctctcagtctcc
cctcttatgaactcttcagtgtcccatgtcatctgtgatgtactgtttctgattggccag
tcatga
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