Silurus meridionalis (southern catfish): 124384303
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Entry
124384303 CDS
T08004
Symbol
rnf115a
Name
(RefSeq) E3 ubiquitin-protein ligase RNF115
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384303 (rnf115a)
04121 Ubiquitin system [BR:
smeo04121
]
124384303 (rnf115a)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124384303 (rnf115a)
Membrane trafficking [BR:
smeo04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
124384303 (rnf115a)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124384303 (rnf115a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-RING_UBOX
zf-C3HC4
Zn_ribbon_19
zf-RING_5
zf-Nse
zf-ANAPC11
zf-C3HC4_3
C1_2
zf-RING_6
DUF7560
Pcf11_C
HypA
Rad50_zn_hook
Motif
Other DBs
NCBI-GeneID:
124384303
NCBI-ProteinID:
XP_046702997
LinkDB
All DBs
Position
4:complement(16213693..16223485)
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AA seq
311 aa
AA seq
DB search
MAEAAAVPPHRFFCHCCKGEVRPKLPEYICPRCDSGFIEEVPEDSSLLDNNTNGLDDTAS
QFAELWQLLFVERPFTVDLDSPDSEPRVPGGAVGLGLGGGPFGGSVPGGLSGTLGGPLGG
GGEHWGPSRPPRLHTQRRYRSRGSSRPDRSPAVEGIVQQFLAGLFANSGAPGSPPLSWTG
MLHSNPGDYAWGQGGLDAVITQLLGQFENTGPPPAEKEKISSLPTVIVSQEQADSSLECP
VCKEDYTVGEPVRQLPCNHFFHSDCIVPWLELHDTCPVCRKSLSGEDSSNQPPSEPSSVN
TEPRTQERWSY
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggctgccgcggttcctccgcatcgctttttttgtcactgttgtaaaggcgaa
gtgagaccgaaactcccggagtatatctgccccagatgtgactctggatttattgaggag
gtgcccgaagactccagtcttttggacaataatacaaatggccttgatgacacagcgtca
cagtttgcagagctctggcagcttctgtttgtggagcggccgttcacagtggatttggac
agccccgactccgagccacgggttccagggggtgctgtaggattaggtctgggaggagga
ccatttggtggctctgtccctgggggcctcagcgggaccctcggtggcccgttaggaggg
ggaggagagcactggggtcccagccgtccccctcgcctgcacacacagaggagatacaga
tccagaggaagcagtcggccggatcgttctcctgctgtagagggaatagtacaacagttt
cttgctggcctttttgccaattcaggtgctccaggttcacctcctctctcatggacaggc
atgctgcactcaaatcctggtgactatgcctgggggcaggggggtctggatgcagtcatt
acacagttactgggtcagttcgagaacacaggtcctcctcctgcagagaaagagaaaatc
tcttccctccccacagtcattgtttctcaggaacaggctgacagcagtttggagtgtccg
gtgtgtaaagaggactacacagtcggggagccagtcaggcagctgccctgcaaccacttc
ttccacagtgactgcattgtaccctggttagaactgcatgacacatgtccggtatgcagg
aagagtttgagtggagaggacagcagcaatcagcccccctcagagccctcttccgtaaac
acggagccccgcacacaggaaagatggtcctactga
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