Silurus meridionalis (southern catfish): 124384308
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Entry
124384308 CDS
T08004
Name
(RefSeq) DENN domain-containing protein 4B-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384308
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
124384308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
COPI_C
Motif
Other DBs
NCBI-GeneID:
124384308
NCBI-ProteinID:
XP_046703000
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All DBs
Position
4:17996004..18027576
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AA seq
1485 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLAGESAPPDDECQQRGGRGVEPISDLAVIARGLGEEVPEGFTC
IEKTLGGHPAELSASFINNPHMFLCYRRSHDKPPIVELGVLFEGKEAVKQGWYVIETTPY
SRCASLSSGGPATHKTFLMYRRAPDSQALNTLGVTDISILMPSKGEVAPHTFCKVDKNLN
TGMWGPALYLCYKRAVAKANALVYEAGLISRYPEQDLESFALPDSVPVFCLPMGVTVESW
PLNTKYQLPVFSTFVLTAASGDKVYGAAIQFYEAYPREALSERQQVRLGLVSVVDRRPIT
NRMVQVKKSVCVLSHWPFFTVFQKFLTFIYRYSISGPHVLPIEKHISSFMHNVPFPSPQR
PRILVQLSPYDNLLLCQPVSSPLPLSGASFVKLLQNLGPENACTLLLAVLIEHKLLLHSL
RPDVLTSVSEALVSMTFPLRWPCPYIPLCPLRCADVLCAPMPFIVGVHSSYFDLYDPPSD
VVCVDLDTNTIFQSEDKKPFSWKSLPRKHAKILLNSLTHLHKTLEKICTPGQEEATLEFL
LTDYDLIYGRQKQLELEIQEAFLRFMSCLLKGYRSYLLPITQAPSDRTTDCSSLFNLQGF
LKSRDRTQQKFYSLLTKTQMFTQFIEECSFVSDRHACLEFFDECVQKVDVEKPEEVRLID
LDETHSGEHTVFIMPPEEPQEADGSECPALYSYETFPLLHPEFFDRPLDQLRITAKGSAP
NSPAPRRTKQEIKLAQKCAQKYSAVPDMWSKCLLGHCYGLWFIYLPTFVRAESTKVRALH
TAYEVLKHMETRKVVLPDEVCYRILMQLCGQYGQPVLAVRVLLEMKKAGIIPNTITYGYY
NKAVLESKWPSTNQGGRLRWAKLRNVLLAVAHFRQPIKQRQKSDFFSPNQGNCTLHPHST
LIRQTSWSGLSESSSHESLTGPITKSNSLSSMRPDKSKLARKAMLQNKSTDDPASRKPPI
SPRDMATPSPVPPDDRVRVRRSEVCLSTFYKEWAETDTDCRCEPERDGRSTEQRETLNRK
AVDENYNNVLSPSRGLAGKLQQLLTPTRNRNSSRRAASVDERRPATNGPSRKSSEQRQSR
KSQVAETLLKAKERLYNATSESSLSVGSDIDLSDPPNSGFSLRKSWDPTQEGVGLEVSMS
SCTLCRSCNSLVYDEEIMAGWTSDDSNLNSSCPFCLASFVPLLNAEICDVGTVSSSQYHC
NWNIGDEVESAARPPSGQDGFLQHLYNGVTEHDSSSETSTYSENSSNTLSSSLGGTPQVT
VAYLSPLVLRKELESLLENEGESVLSQVQLLDSHSILFWNLVWYFTRLGLPSNLLQLVRA
SPLASQISQSLESTSVRVRLLWDILTPDTDYWPPLYMIWRMHSGVPMRNYGWRRHNHPFS
LSFLEEVLRCVGMNEVHKAITFFLDTIGKQPGTPRTQRSLYREFLFLTLAAMGKDHVAAF
DKRYKAACAKLSSSMGREELRRKRAQPPSAKAVDCRRCFLVPLDC
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggagaaatgtcctcagttggtggattattttgtggtggcggggctggcgggt
gaatcggctccaccagacgatgaatgccagcagagaggcggccgtggtgtagagcccatc
agcgatctggctgtgatcgcccgtggccttggagaagaggtgcctgaaggtttcacatgc
atcgagaagacactggggggccatccagctgagctcagcgccagcttcatcaacaaccca
cacatgttcctctgctacagacgcagccatgacaaacctcctattgtggagcttggtgtg
ctgtttgaagggaaagaggcagtgaagcagggttggtatgtgattgagacaaccccgtac
agccgctgtgccagtctgagctcaggaggccctgccacccataagacgttcctcatgtac
cggcgtgcccctgactcgcaggccttaaacacactgggggtgactgatatctcgatactc
atgcccagtaagggagaagtggcaccacacaccttctgcaaagttgacaagaacctgaac
actggaatgtggggcccggctctgtacctgtgctataagcgggctgtcgcaaaagccaac
gcccttgtgtatgaggcagggctgatcagtcgttaccccgagcaggatcttgagtcgttt
gcattgccggactcagtccctgtcttctgtctgcccatgggcgtcactgtagagagctgg
ccacttaatactaagtaccaactccctgtcttctccacctttgttctcaccgctgcgtct
ggagataaggtttatggagctgctatccagttctatgaggcgtacccacgggaggctctg
tctgaaaggcagcaggtgcggcttgggctggtcagtgtagtagaccgtcgacccatcacc
aaccgcatggtgcaggtgaagaagagcgtgtgtgtgctttcgcactggccgttcttcacc
gtcttccagaagtttctcactttcatctatcgctattccatctctggacctcatgtactg
cccattgagaagcatatctccagtttcatgcacaacgtgcccttcccttcaccgcagcga
ccgcgcattctagtacagctgtctccatatgataacctcctactgtgccagccagtgtcc
tcacccttaccactgagcggtgccagctttgtaaaacttctacagaatctggggccggag
aacgcatgtaccctgctgttggctgttctcattgagcacaagctgctgctacattccctc
cggccagatgtgttgacctccgtcagtgaagccctggtgtcgatgacatttcctttgcgt
tggccctgtccttacatcccattatgcccgctacggtgtgcagatgtgctatgtgcccca
atgcccttcatcgtgggtgttcactccagctattttgacctgtacgaccctccttcagat
gtggtgtgtgtggaccttgacaccaacactattttccaatcagaagacaagaaacccttt
tcgtggaaatctttacccaggaaacatgcaaaaatcctactcaactcactcacccacctg
cacaaaacgttggagaaaatctgtacccctggtcaagaggaggccactctggagttcttg
ctgacagattacgatctgatctatggacggcaaaagcagctcgagctggagatccaggag
gcctttttgcgctttatgagctgccttctaaaaggctaccgctcctacctcctgcccatt
acccaggccccctcggatagaaccactgactgcagctcccttttcaatttgcaaggtttt
ttaaagtctcgagatcggacacagcagaagttttattcgctcctcaccaagactcagatg
ttcacacagtttatagaggagtgctcctttgtcagtgaccgacatgcatgccttgaattc
tttgacgagtgtgttcaaaaggtggatgtggagaagcctgaggaggtgaggctgatagat
cttgatgagactcacagcggagagcacacagtgtttattatgccgccagaggagccacaa
gaagctgacggctctgaatgccctgcactctacagctacgagacgtttcctttgttgcat
cccgagttctttgaccggcctctggatcagctccgtatcacggcaaagggaagtgccccc
aacagccccgcccctcgccgaaccaaacaggagatcaagctggcacagaaatgtgcgcag
aaatactctgcagtaccagacatgtggtctaagtgtctgctgggtcactgttatggtctg
tggttcatatacctgcccacctttgtccgggctgagagcaccaaggtgcgggcactgcac
actgcctacgaggtgctcaaacacatggagacacggaaggtagtgcttcctgacgaggtg
tgctacaggatcttaatgcagctttgtgggcagtacgggcagcctgtgcttgctgtccgg
gtcctgctggagatgaagaaagcaggaatcattcctaacaccatcacatatggctactac
aataaggctgtgctggagagcaagtggccatccaccaatcagggaggtcgccttcgatgg
gccaagcttcgcaacgtccttttggctgtggcacatttcaggcaaccaatcaaacagaga
caaaagagcgacttcttcagcccaaatcaaggtaactgtactcttcacccgcactccact
cttatacgccagaccagctggagcggtttgagtgaaagttcaagccatgaatccttgact
ggtcccatcactaagagcaacagtctaagcagtatgcgtcctgataaatctaagctagct
agaaaagcaatgctacaaaataaaagcactgatgacccggcctcccgcaaaccccccatc
agtcctcgggatatggctacaccctccccagttcctcctgatgatcgtgttagagtgcgg
cgcagtgaggtctgcttgtccaccttttacaaagagtgggcagagacagatacggactgc
aggtgcgagccagagagagatggcagatccacagagcagcgggaaacactgaatcgcaag
gcagtagatgagaactataataacgtgctgtccccgagtcgtggcctggcaggcaaactg
cagcagcttctcacacccacacgtaatagaaactcatcacgccgtgcagccagtgtagac
gagcgacggcctgccactaacggtccgtcacgcaaatcatctgaacagaggcagtctcgc
aaatcacaggtggccgagacactgctgaaagccaaagagcgactctacaatgccacctct
gagagctcattgtctgtaggcagtgacattgacctgtcagaccctccaaattctggtttt
tcactcaggaagtcatgggatcctacacaggaaggggtagggcttgaggtgtctatgtcg
agctgtacgctgtgccggagctgtaactcactggtttatgatgaagagatcatggcaggc
tggacatcagatgactccaatctgaactccagctgcccattttgtttggcatcattcgta
ccactgcttaacgcagagatctgtgacgtcgggactgtcagcagcagtcagtatcactgt
aactggaacataggggatgaggtggaaagtgcggcgaggccccctagtggtcaagatggc
tttctgcaacatctgtataacggtgtgaccgagcatgactctagttcagagaccagcaca
tactctgagaacagcagtaatactctaagctcatctttgggtggtacgcctcaggtaaca
gtggcatacctgagccctctggtcttgcgtaaggagctggaaagtcttttggagaacgaa
ggagagagcgttctctctcaggtgcagttactggacagccactccatccttttctggaat
ctggtgtggtacttcactcgccttggtctccccagcaatctgctgcaactggtgcgggcc
tctccgctagcgtcacagatttcacagagcctcgagagcacttcagtaagggtgaggtta
ctgtgggatatcctgacgcctgatacggattactggcctccactctatatgatctggaga
atgcacagtggagtccctatgcgtaactatggttggcgcagacacaaccaccccttctca
ctgagctttctggaggaagtcctgcgctgtgtcggtatgaatgaggtacacaaggccatc
acgttcttcctggacaccattggcaagcagccaggcactcctcggacacagaggagcttg
tacagggaatttctgtttcttacattagctgctatgggcaaagaccatgttgctgctttt
gacaaaaggtacaaggctgcctgtgccaagctgagcagctccatgggtcgagaggagctg
aggaggaagagagctcagccacccagcgccaaagctgtggactgcaggcgctgtttccta
gtgcccctggactgctga
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