Silurus meridionalis (southern catfish): 124384389
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Entry
124384389 CDS
T08004
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2-like
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04120
Ubiquitin mediated proteolysis
smeo04137
Mitophagy - animal
smeo04144
Endocytosis
smeo04340
Hedgehog signaling pathway
smeo04350
TGF-beta signaling pathway
smeo04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124384389
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
124384389
04350 TGF-beta signaling pathway
124384389
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124384389
04137 Mitophagy - animal
124384389
09144 Cellular community - eukaryotes
04520 Adherens junction
124384389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384389
04121 Ubiquitin system [BR:
smeo04121
]
124384389
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124384389
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
124384389
Membrane trafficking [BR:
smeo04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
124384389
Autophagy
Mitophagy
Other mitophagy associated proteins
124384389
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
HECT type E3
124384389
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
124384389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
CC142_N
Motif
Other DBs
NCBI-GeneID:
124384389
NCBI-ProteinID:
XP_046703141
LinkDB
All DBs
Position
1:5979200..6043148
Genome browser
AA seq
759 aa
AA seq
DB search
MSNQGARRNGPVKLRLTVLCAKNLSKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPK
WNQHYDLYIGKLDSITISVWNHKKIHKKQGAGFLGCVRLLSNVINRLKDTGYQKLDLNKL
GPNNHDNIRGQIVVSLQSTDRIGTGGPLGDCSRLFDNDLPDGWEERRTATGRIQYLNHIT
RTTQWERPTRPASEYASPGRPLSCLLDENTPILNSNGAMGVTHSNSRAQERRVRSQRHRN
YMSRTHLHTPADLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEELGPLP
PGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSGSRGVENPNLSRAPQLKEQ
PVLCNLSEEAEDCLTAPKYKRDLVHKLKVLRQELSQQQPQAGHCRIELCRDEIFEESYRQ
VMKMRQKDLWKRLMVKFRGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQI
NPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSITLDDMEAVDPDL
HNSLVWILENDITGVLDHTFCVEHNAYGQIIQHELKPNGKNIPVSEENKKEYVRLYVNWR
FLHGIEAQFLALQKGFNEVIPQHLLKAFDEKELELIVCGLGKIDIHDWRANTRLKHCTAD
SSVVKWFWKAVETFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRQFTIQQIDASTYN
LPKAHTCFNRIDIPPYENYDKLYDKLLTAIEETCGFAVE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcaaggggcgaggagaaatggtccagtgaaactgcggctcacagttctctgt
gcaaagaacttgtcaaagaaggacttcttcagactgccagacccttttgctaaagtggtg
gtggatggttctggtcagtgccactcgacagacacggtcaaaaacacactggacccgaaa
tggaaccagcactatgacctttatattggtaagctggattcaatcaccatcagcgtatgg
aaccataagaagattcataaaaagcagggagcagggtttcttggctgtgtacgtcttctc
tccaatgtcattaaccgcctcaaagacactggctatcaaaagctggacctgaacaagctt
gggcctaacaatcatgacaacatcagagggcagatagtggtgagcttgcagtccacagac
agaataggaacaggaggccccttgggcgactgcagccgtctgtttgacaacgacttacca
gatggctgggaggagaggagaactgcgacaggcaggattcagtatctcaatcacatcaca
cggacaacacagtgggaaagaccaaccaggcccgcctcagagtatgcaagcccgggtcgg
ccactgagctgtctgctggatgagaacacacccatcctgaattcgaatggagccatgggc
gtcacacactccaactccagagctcaggagagacgtgtccgctcacagagacacagaaac
tacatgagcagaacgcacttgcacacacctgccgatctgcctgagggatacgagcaaaga
acgacgcaacagggccaggtctacttcctccacacacagacaggggtgagcacgtggcat
gacccgcgtgtgcccagggatctaagcaatgtgaactgtgaggagctcgggcctcttcca
ccaggctgggaaattagaaacacagccactgggcgggtgtacttcgtggaccacaacaac
agaaccacacagttcacagacccgcgcctctcagccaacctgcacctagtcctcaatcca
agtggatctcgtggtgttgagaatccaaacctcagtcgtgccccccagctgaaggagcaa
cctgtgctgtgtaatctctctgaggaggctgaagactgtttaactgctccgaaatataag
cgggatctggtgcacaagctgaaggtgttgagacaggagttgtctcagcaacaaccacag
gctggccactgtcgcattgagctctgtagagatgagatctttgaggagtcgtatcggcag
gttatgaagatgaggcagaaagacttgtggaagaggctgatggtgaagttcagaggagag
gaggggcttgattatggaggtgtggccagagaatggctgtacttgttatcccatgagatg
cttaacccatactatggcctgttccaatactcacgtgatgacatctacacacttcagata
aaccctgattctgcggtcaacccagagcacctgtcctatttccactttgttgggcggatc
atgggcatggcggtgtttcatggccattacattgacggaggcttcactctacccttctac
aaacagttacttggcaaatccatcacactcgacgacatggaggcagttgacccggaccta
cacaacagccttgtctggatcctagaaaatgacatcacaggtgttttggaccatacgttt
tgtgtggagcacaatgcttatggacagatcatccagcatgagcttaaacccaatggaaag
aacatccccgtctctgaggagaacaagaaagagtatgttaggctgtatgtgaactggcgc
ttcctacatgggatcgaagctcagtttctggctctgcaaaaaggcttcaacgaggtcata
ccacagcacctactcaaggcctttgacgagaaggagttggagttaatcgtgtgtggcctg
gggaagatcgacatccacgactggagggcaaacacacgcctgaagcactgcacggctgac
agcagcgtggtaaagtggttctggaaagccgtggagacgtttgatgaggagcgcagggcc
agactcctgcagtttgtcaccggctcatctcgagtgcctctgcaaggcttcaaagcctta
caaggtgctgcagggcccagacagttcaccatccagcaaatcgatgccagcacctacaac
cttcccaaagcccacacatgttttaatcgcatcgacattcctccctacgagaactacgac
aagctctacgacaagctactgacggccatcgaggagacctgtggctttgcggtcgaatga
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