Silurus meridionalis (southern catfish): 124384585
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Entry
124384585 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1A-like
KO
K13126
polyadenylate-binding protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
smeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124384585
09123 Folding, sorting and degradation
03018 RNA degradation
124384585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124384585
03041 Spliceosome [BR:
smeo03041
]
124384585
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124384585
mRNA cycle factors
Stress granule specific factors
124384585
Spliceosome [BR:
smeo03041
]
Complex C
Other components
Complex C specific factors
124384585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
DUF6107
Drf_FH1
Motif
Other DBs
NCBI-GeneID:
124384585
NCBI-ProteinID:
XP_046703518
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All DBs
Position
4:6026808..6031747
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AA seq
470 aa
AA seq
DB search
MNDTRLRQTEILKRDFRILVETIKMNSSISALYVGDLHHEVTENMLMEKFSSVGHVHSIR
ICRNWNTGVSLSYAYVNFYQRADAERALATLNCELLMGNPMRVMWSQRDSTMRKSGIGNL
FIKNLDLEKIDSMALFDLFSVFGKILSCRVVRYKTGTKGYGYVNLSLQXGANLAKEKLNG
KLLNGHKVSIQHFKSRKEHETERNHHTQVFINKQKTLLRPEHQDNPVHHNVQRIKNVQTQ
NMTPFTPSQKVERNKENAPAVNTVPAVEERTTVDEKPALPQVPAVEQSPALPQVPAVEQG
PAPPQVPAVEQSPAPPHLTGVEQSPALPQVPAVEQSPAPSHVPAVEQSPAPSHVPDVQDV
SMAAAPQKRLTIYMLESADFEMQIQMAHDHLLPLVEKIHPAEANKISWMLIGSKNNFEIM
NMISDPDLLRAKVDEMNMILKTGEAGVKSETKMLFGTKKKRKNKKKKIYL
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacacccggctgaggcaaacggagatcttaaagagagatttcaggatcctggtg
gagacgatcaaaatgaattcgagtatttcagcactgtatgttggtgatctgcaccatgaa
gtgacagaaaacatgctgatggagaaattcagctctgtgggccacgttcactccatccgg
atctgcaggaactggaacaccggcgtttcactcagttacgcctacgtcaacttttaccag
cgagccgatgctgagcgagcgttggcaacacttaattgtgagctccttatggggaaccct
atgagagtcatgtggtctcagagggattccaccatgaggaaaagtggcatcgggaacttg
ttcatcaagaacttggacctggagaagattgacagcatggccctttttgacctgttttca
gtctttgggaagatcctgtcatgcagggttgtccgttacaagacggggacaaaaggatat
ggatacgtcaatttgagtctccagnnaggcgcgaatttggcaaaagagaaactcaatggc
aaacttcttaacggccataaagtctccatccaacactttaagtctcgtaaggagcacgag
actgagaggaaccaccacacccaggtcttcattaacaagcagaagaccttactgagacca
gaacaccaggataaccctgtccatcataacgtgcagaggataaagaatgtgcagactcag
aatatgactcccttcacaccaagccagaaggtagagcgaaataaagaaaatgcaccagca
gtaaacacagttcctgctgtagaagagcgcacaactgtggatgagaaaccagctctacct
caagttccagctgtagaacagagtccagctctacctcaagttccagctgtagaacagggt
ccagctccacctcaagttccagctgtagaacagagtccagctccacctcatttaacaggt
gtagaacaaagtccagctctacctcaagttccagctgtagaacagagtccagctccatct
catgttccagctgtagaacagagtccagctccatctcatgttccagatgtgcaggatgta
tccatggctgcagcacctcagaagcgcttaactatttacatgttggagtctgcagatttt
gaaatgcagatccagatggcacatgatcacctgttgcctctggtagagaaaatccaccca
gctgaagcgaataaaatttcatggatgctgattgggagtaaaaacaactttgaaatcatg
aacatgatttctgatcctgatcttctgcgagccaaagtggatgaaatgaacatgatccta
aaaacaggagaagcaggagtcaagtcggaaacaaagatgctctttggcacaaagaaaaag
aggaagaacaagaagaaaaaaatatatttataa
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