Silurus meridionalis (southern catfish): 124384738
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Entry
124384738 CDS
T08004
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04140
Autophagy - animal
smeo04148
Efferocytosis
smeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124384738 (vps16)
04148 Efferocytosis
124384738 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124384738 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124384738 (vps16)
Membrane trafficking [BR:
smeo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124384738 (vps16)
Hops complex
124384738 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Motif
Other DBs
NCBI-GeneID:
124384738
NCBI-ProteinID:
XP_046703681
LinkDB
All DBs
Position
1:complement(3193619..3202222)
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AA seq
835 aa
AA seq
DB search
MAFVTANWNPLGENFYRKFELYEMGWNLKDGLRDCLIAAAPYGGPIALLREPQRRSPNAR
PQLEIYSSSGGTLASFPWKSGVVKQLGWTVCDDLLCIQEDGTVLIYDLFGDFKRHFSMGN
EVGQSQVVEAKVFHSPYGTGVAILTGASRFTLATNIDDLKLKRLPEVPGLQGAPSCWAVL
TQDRQSKILVANGADIYILDYGACTAVSPPGLSSQANSIVHMCVSFSYKYLALFTDSGHV
WMGSTNLREKLSEVETKVRNPPRQMAWCRRPKSQQPSVVIMWDRYLLVVGVCKDTIPYHL
EDDSILVPELDSVRIINAINHELLQEVPDACEEIFKIASMAPGALLLEAHKEYEKESQKA
DDYLREIKDKNLLGEAVKQCVEAAGHEHEAETQKTLLRAASFGKCFLSNFPPEPFVTMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLTDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEADEIIAKTISLKLGDAAGISYSEIANKAYECGRTELAIKLLEFEP
RSGEQVPLLLRMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFHVKASYKEKRLEARIASLQSAVDEYNKAKNE
FAAKATEEEMRLLRFQKKLEEDKGECLLGFSLHDTLCTLLSLGLHKQAEQLYKDFRVPDK
RYWWLKLTALADKADWEELEKFAKSKKSPIGYMPFVEVCVKRNNRFEAKKYVSKVTPEQK
VKAHLAVGDLEGAADAAIERRNEGEITTVLSHCSPGTDRALVERLNRAKTTATKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtcaccgccaactggaatcctcttggggagaatttttacaggaagtttgag
ctgtatgagatgggctggaatctgaaggatggtctcagagactgtttgatagctgcagct
ccatacggtgggccaatcgctcttctgagggagcctcagcgccgctctcccaacgcccgg
ccccagttagagatctattcttcttctggaggaactcttgccagctttccgtggaagagt
ggtgtggtgaaacagctgggctggacggtgtgtgacgatctcctgtgcattcaggaagat
ggcaccgttctcatctacgacctttttggtgattttaagagacacttcagcatgggcaat
gaggtgggacaaagccaggttgtggaggccaaggtcttccattcgccctatggaactgga
gttgctatactaacaggagcatcccggtttacgctggcaactaatattgatgatctgaag
ctaaaaaggttacctgaggtaccaggtctccagggggcgccatcttgctgggcagtgctt
acccaagacagacaaagtaaaatcctggtggcaaatggtgctgatatttatattctggat
tatggcgcctgcactgctgtgagccctccaggcctctcttctcaagccaacagtatagta
cacatgtgtgtgtcattcagctataagtacctggcactgtttactgactcgggccatgtt
tggatgggttccactaacctgagggaaaaactcagtgaagttgagaccaaagtcagaaat
ccacccagacagatggcatggtgtcgcaggcctaaaagtcagcagccctcagtggtgatc
atgtgggatcggtacttgctagtagtaggagtgtgtaaagacaccatcccataccacctt
gaagacgactccattctggtcccagagctcgacagtgttcgaatcatcaacgctattaat
catgaacttttgcaggaggtgccagatgcctgtgaagaaatctttaagatcgcctcaatg
gctcctggagcactgctgctggaggctcacaaagaatatgagaaagagagccagaaagca
gacgactatctgagggagattaaggataagaatttgttgggcgaggcagtgaagcagtgt
gtggaagcagcaggacatgagcatgaggcagagacacaaaaaacactcctgagggcagcc
tccttcgggaaatgttttctgagtaactttcctcccgagccgtttgtcaccatgtgtcga
gacctgcgagtgttaaacgctgtgagagattacaccgtgggaatcccgctcacacacact
cagttcaaacagatgactgttcaagtgctcacagaccgattggtatatcgcaagttgtat
cctctggccatcgagatctgtcgctatctgaaaactcctgagtaccagggtgtgagtcgt
gtgctcaaacactgggcctgctgcaaggtgcagcagaaagaggaggctgatgagatcatt
gcaaagaccatcagtttaaagctgggtgacgccgctggaatctcctactccgaaatcgca
aataaagcctacgagtgcggtcgcaccgaactcgccataaagctgctggagttcgagcct
cgatctggtgagcaggttcctctgctgctcaggatgaagaggagccagttagcactcagc
aaagccatcgagagtggagatactgaccttgtgtatacagtggtgacgtacttaaagaat
gagatgaacagaggagacttcttcatgacccttaggaatcagcccgttgccctcagcctc
tatagacagttctgtaagcatcaggaacaggatacgctgaaggatcttttcaatcaagat
gatgatcaccaggaattgggcaatttccacgtgaaagccagttataaagaaaaaaggctg
gaggctcgaattgcttcgttacaaagtgctgtagacgagtacaacaaggccaagaatgaa
tttgctgccaaggccacagaggaggaaatgcgtctgctgcgtttccagaagaagctggag
gaggataaaggcgagtgtctcctgggtttctctctgcatgacactctgtgcaccctgcta
tctctgggtctccataagcaggccgagcagctctacaaagacttcagagtgcctgataag
aggtattggtggcttaagctgacagcgcttgctgataaagcagactgggaggagcttgag
aaatttgccaaaagcaagaaatcacccattggctacatgccttttgttgaagtgtgcgtg
aaacgcaacaacagattcgaggccaagaaatacgtgtcgaaagtcacaccggagcagaag
gtcaaagcccatctggcagtcggcgatttggaaggggcagcagatgcagctattgaaagg
aggaacgagggagagatcaccactgtcctgtctcactgttcccccggcacagaccgtgct
ctggtagagcgccttaaccgagccaagaccactgccactaaaaaatga
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