Silurus meridionalis (southern catfish): 124384978
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Entry
124384978 CDS
T08004
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A
KO
K08532
RAR-related orphan receptor alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124384978 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
smeo03310
]
124384978 (rorc)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
124384978 (rorc)
Nuclear receptors [BR:
smeo03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
124384978 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
124384978
NCBI-ProteinID:
XP_046703966
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Position
4:20078094..20097452
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AA seq
482 aa
AA seq
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MMRAHIEVIPCKICGDKSSGVHYGVITCEGCKGFFRRSQSSSVQYSCSRQSNCLIDRASR
NRCQSCRLKKCVAQGMSRDAVKFGRMSKRQRDSLFAEVERHQQQQQQQQRLQASQAEPEP
IPAYRPGKESRGRTAHLLQPLVPTFPYSLDTELNCSSEIHQYHGSATGEAQVTALAYRSS
QRSGESSSFSTLRGFDSRRSTPEAILSIPGNEMGLRTFDTDSLFCPYPMSTHIEELCASI
FRSHRETSQYHAEDLQALKWKVFSREEVHAYQNKTMDEMWQHCAVRLTDAVQYVVEFAKR
IPGFRQLGQNDQIALLKSGSMEVVLVRMSRIFNTENSTVFFDGKFAGTELFKSLACGDFI
ASVFDFAHSLCALRLTEQQVALFSSLVLINADRPCLEDRDKVLRVRKDVELALNQLLHRD
NQESLLHKLYQKMALLKNLCSLHIEKLRWFRQYYPMTVHSLFPPLYKELFVTDSDVHTMV
TL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgagcccacatcgaggtgattccctgtaagatctgtggagacaagtcatccggt
gtgcactatggggttatcacctgtgagggctgcaagggtttttttcgaaggagtcagtcc
tccagtgtccagtattcttgctctaggcagagtaactgcctcattgaccgcgccagcagg
aaccgctgccagagctgccgactcaaaaaatgtgttgcccagggaatgagccgagatgct
gtaaagtttggccgcatgtctaagcgtcagagagattctctttttgctgaggttgaaaga
catcagcagcaacaacaacaacagcagcgtcttcaggccagccaagccgagcccgaacct
attccagcctaccggccaggcaaagagtccagaggtcgcacagcacatttactccagcca
ctggttcccacctttccctacagtcttgacactgagctcaactgctcttcggagatacat
caatatcatggcagtgccacaggtgaggcccaggttacagctttggcctacagaagttct
caaaggagtggcgagagcagcagtttttcaacgttgagaggctttgactcccgaagatct
acaccggaggccatcctgagcattccaggaaatgaaatgggactacgaacttttgacact
gacagtttgttctgtccctatcctatgtcaacacacatagaggagctgtgtgcaagtatt
ttccgttctcaccgggaaacaagtcagtatcatgcggaagacctgcaggctcttaaatgg
aaggttttcagcagggaggaggttcatgcctaccagaacaaaactatggatgagatgtgg
cagcattgtgcagttcgtttgacagatgcagtacagtatgtggtggaatttgcaaaacgc
attccagggtttcgtcaacttggtcagaatgatcaaattgcccttctcaaaagtggttcg
atggaagtagttctggtccgcatgagtcggatatttaatacagagaacagcacagtcttc
tttgatggcaagtttgctggaactgagcttttcaagtctctggcatgtggcgattttatt
gcatcagtatttgactttgcccacagtctttgtgctctgaggctgacagagcagcaggtg
gcgctgttcagttcacttgttctcataaatgcagatcgtccatgtctggaggacagagac
aaagtgctgagagtgagaaaggacgtggaattagcacttaatcaactcctacacagagac
aaccaagaaagtttactacacaagctctaccaaaagatggcattgctgaaaaacctgtgt
tcactgcacattgagaagctgcgctggttcaggcagtattacccaatgactgtgcactct
ctcttcccaccactttacaaggagctgtttgtcacagacagtgatgttcacacaatggtt
actctctaa
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