KEGG   Silurus meridionalis (southern catfish): 124385045
Entry
124385045         CDS       T08004                                 
Symbol
wdr48a
Name
(RefSeq) WD repeat-containing protein 48a
  KO
K15361  WD repeat-containing protein 48
Organism
smeo  Silurus meridionalis (southern catfish)
Pathway
smeo03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:smeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    124385045 (wdr48a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smeo03400]
    124385045 (wdr48a)
DNA repair and recombination proteins [BR:smeo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     124385045 (wdr48a)
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IP5PC_F Beta-prop_Vps41 WDR54 WD_LRWD1 WD40_RFWD3 RAWUL Beta-prop_NUP159_NUP214 WD40_like Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 124385045
NCBI-ProteinID: XP_046704072
LinkDB
Position
4:29487397..29513300
AA seq 676 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPSAIWVSTTKSTVNKWSLKGIHNFRASGDYDNDCSTPLTPLCTQPDQVIKGG
ASIIQCHILNDKRHIVTKDTNTNIAYWDVLKACKVEDLGKIEFDEEIKKRFKMVYVPHWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFTSPDGSDPKCDESGGLLLQALLEYWPRTHS
SPMDEETELNHMNGEHENRIQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDSESQTSGSAGEKPSEQKEEEDMAVLAEEKIELLCQDQVLDPNMDLRTVKHFI
WKSGGDLTLHYRQKST
NT seq 2031 nt   +upstreamnt  +downstreamnt
atggcgacccatcacaggcagaatgctgccggccggaggaaagtgcaggtgtcgtatgtg
atcagagacgaagtggagaaatacaaccgtaatggagttaatgcattgcagctggatcca
gctcttaaccggctcttcactgctggtcgcgactccatcatccggatatggagcgtcaac
cagcacaagcaagacccatacatagcatcaatggaacatcacacagactgggtcaatgac
atcgtcctctgctgcaacggaaaaactttgatatctgcttcatcagataccactgtgaaa
gtctggaatgcacataaaggtttttgtatgtcaacactgcgaacacataaggattatgtt
aaagctttagcgtatgctaaagataaagagctggtggcttcagcagggctggacagacag
atcttcttgtgggatgtaaacacacttacagcactgactgcctccaataatactgtcact
acttcgtctctcagtggaaacaaggattcgatctacagtctggcgatgaatcagatgggc
acagtaatagtatccggatctactgagaaggttttaagagtgtgggacccccgcacctgt
gccaaactcatgaagctaaaaggacacacggacaacgtgaagtcgctactgcttaacaga
gatggcactcagtgcctgtcgggcagttcggatggtacgattcggctgtggtcgctagga
cagcagaggtgtatagccacgtaccgtgtccatgatgagggggtgtgggcgctacaggtg
aatgaagcctttacacacgtctactctggaggccgggaccggaagatttactgcacagac
ctgcgcaatccggacatacgtgtcctcatttgtgaagagaaggcccctgtcctaaagatg
gagctcgacaggtcagcggacccaccgtcggccatctgggtgtccaccacaaagtccacc
gttaacaaatggtctctaaagggcatccacaatttccgagcatctggcgattacgacaat
gactgcagtactcccctgacacctctgtgcacacagccggatcaggttattaaaggtgga
gccagtataattcagtgccacattctcaacgataagagacacatagtcaccaaagacacc
aacaccaacatcgcatactgggatgtgttaaaggcatgtaaagttgaagatttgggaaaa
atcgagtttgatgaggagatcaagaaacggtttaagatggtttacgttcctcactggttt
tctgtcgatcttaaaacagggatgctgactattacacttgatgagagcgattgctttgcc
gcttgggtctcggcaaaggatgctggatttaccagtccagatggctcagatccaaaatgt
gatgaatctggtggactgctgctccaagctctgttggagtactggcccaggacgcacagc
agtcccatggatgaggaaacagaactgaaccacatgaatggtgagcatgagaacaggata
cagaaaggaaacggctatttccaagtgccaccacacactcctgttatttttggtgaagcc
ggaggaagaacgttgttcaggttgctctgtagagactctggaggcgagaccgagtccatg
ctgctcaatgaaacggttccacagtgggttattgacatcacggtggataaaaacatgcca
aaattcaacaaaatccccttctacctccagccacattcttcgtctggtgccaaaacgttg
aaaaaggatcgtctctcagccagtgacatgctccaagtgagaaaagtgatggagcatgtt
tatgagaaaataattaacctagacagcgagtctcagacgagcggttcagctggagagaag
ccgagtgagcagaaagaggaggaggacatggcagtgttggctgaagagaagattgagctg
ctctgtcaggatcaggttctcgatcctaacatggacctgcgaacagtaaagcacttcatt
tggaagagtggcggtgacctgacgcttcactacagacagaagtccacgtaa

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