Silurus meridionalis (southern catfish): 124385245
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Entry
124385245 CDS
T08004
Symbol
col7a1
Name
(RefSeq) collagen alpha-1(VII) chain isoform X1
KO
K16628
collagen type VII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124385245 (col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
VWA_2
Kunitz_BPTI
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
DUF4992
gpW
Nis1
Motif
Other DBs
NCBI-GeneID:
124385245
NCBI-ProteinID:
XP_046704407
LinkDB
All DBs
Position
1:31895657..32029163
Genome browser
AA seq
3103 aa
AA seq
DB search
MWHRTLVAVVLLSLPNRSTAQGTCNNVGAADIVFLVDGSSSIGRTNFALVRSFMAGIIRP
YATAVGATGVRVGAVQYSDTARVEFTFTTYLRGTELLSAIENLNYKGGNTRTGAGLKYIA
DNFFNPRTTRDVPKLAILITDGKSQDNVQDPAEKLRRLGVKIFAVGIKSADQRELELISS
PPQSEFTSFIEKFRDLSSLLPNLSPRVCSASGGSYSSDDVFSGPTDLKVAEVTFNSIRFE
WTAAGGPVNNYLVQYTPLSGLGQPLTAELRQDTVSANEQTYLARDLRSGTDYLVSVIAQY
PNSVGESVSAKARTRSVQGVAALRLVQAGFFTLALSWDPPSGSIQGYRITYGPRGEPESL
LREKTLGAEATSVTLDSLQADTEYIIKLYPLYPRTNVAPTTLTASTLSLQGVQQLSVVTI
SNSSVEVRWQGVQGARGYRVVWGPFVGSDIETVEVSGDSEAHTLVNLRPDTEYIITVIAL
YNGETEGPAANARFKIERAEQQVLRAETTGPSSIQLTWKFIAAARGYRLEWRKEGESSRV
QRQTFPQSTTQYEITGLQPSTDYIITLYTLYDGREESTPAIPLVNKVTNLRVVETRGRIV
RLAWTGVAGATKYNILIINKQSGSEVKRSVYGNQTTFDLVNLVGGVSYTVRVAALVGYTE
GHPTAITITPEFTSAQVPDKVKNLRLLNVNSRRIRIGWDAISEATGYRVTWRQGNSPEQF
QELGAGITSYTIERLQPDESVVVGVAALINGQIGDVVTLSTRTNGHIGTVTGLQITDIGS
TWIRVSWDSVSRATGYKITWRRNDGTEDFQMVHADVRSYTISGLQQSSAYRISVSALAGS
REGPAATQNIQTVTDEVVVGPVTKLQHEARGEVVRITWVGVQGATAYRVLWKRSDGGQEQ
SQLVGGNITSVDLRQLEGGAQYDVQVVALVQNREGPPVSVKVTTGPLYDERPKDVHVEQL
SLGSLRISWRAVRGADGYRIYWRSSQGESETSRLIGRDLTSYTLEGLRPGLTYTIRLAAV
LNGREGPPYVISQSTAAQSSVTNFRVVDVTQNSVLLAWNPAPGATRYTLRWQDERDSGSI
QTLNLPETTSSFRVTNLRLGRLYRFTVQPVFYDSPGLEADVEERTVCVDGRLDVVFLVPA
TRDRSALEEPVLSLLASAAGSLPSIGVRDSQVSVVVYGDEPKARFLLSRHSNSETLLREI
VSIPFTERSGNNIGQALSYTKQFVLRESAGRRSGFPGVVVIIADRKSEDDIRRLVTELKG
TGVAVLAVGVGRANTEELLLAVTDSSPQNLLQARDAEDLYRLQADLADLLCGLARGTVVP
GSGCTVQCPPGQKGELGQKGERGSDGVPGRKGEPGRDGTPGREGTRGPEGPAGPPGPSFR
GEKGESGVPGLQGNPGLPGRPGNPGAAGPTGVQGLPGVRGDPGEPGSAGLSGSKGQKGDR
GEPGSATGVVPGRKGEPGLSGLPGTPGRPGIDGAKGESGIPGVPGKDGRPGIAGTPGLSI
KGEKGSRGEPGIPGGGSGPAIKGEKGEPGRLGLTGPQGPTGLTGQKGAKGESGESIKGSP
GPPGAGGEPGDRGPRGPPGEIGSKGDRGQAGEPGSQGDRGERGPPGPPGDKGDVGRPGLM
GPQGPRGLSGANGLPGEKGADGAKGEPGGGAGSLGKKGEQGQKGASGPEGPPGEKGDMGQ
KGDRGLPGIGLPGLLGPKGEPGDRGLPGLAGRIGAKGNQGESGERGEAGNPGPAGPAGPK
GKDGLKGDRGEDGIPGESGLSGKPGERGLRGVPGLQGQPGEKGDMGDPGEHGRNGSPGPI
GPRGQKGDQGIQGPPGPPGDAGDGVTFHKGDKGDKGESGDPGEHGSKGLQGEAGTPGTPG
LRGAEGQRGPVGARGDPGERGSPGEKGERGAAGLDGRPGQDGKPGPPGSPGLRGDPGKTG
DPGRDGLAGLRGPQGPPGPVGPPGAAGTNGKPGEDGKAGSTGKPGEDGVPGEDGRKGEKG
DSGPPGRNGQDGIKGDRGIAGPTGPSGPAGPPGVPGNIGPPGQVIYVKGADISPIPGPRG
PPGPPGQPGIPGDAGTRGERGPQGTKGEHGDPGEDGSPGKPGTSVDVKRALSDFGIEIRD
LQVVMEKKDLLIRETDKGAKGDKGDSGPQGPPGADGARGFPGERGQKGDHGQKGETGPQG
PTGRAIGERGPEGPPGQAGEPGKPGIPGVPGRAGELGESGKSGDKGERGEKGEKGETGKP
GVNGGVGPPGPKGDSIVQSVPGPRGLQGPQGIKGEDGAQGPPGTKGERGVAGFRGEKGER
GEVGEKGRDGLPGLAGEPGKQGQDGKPGLPGFPGVLGRPGNPGEPGIRGPTGPTGLNGSP
GQPGVKGDQGEAGVGVQGPPGPQGIRGLPGLTGTPGAIGPQGPPGLSGQTGEGGKPGVPG
RDGVPGKEGTPGLPGKQGIAGPVGPPGTKGEQGDSGPPGKSVAGPPGVKGERGPPGETLP
GVAGERGSPGLQGIKGDKGPAGIKGDKGGSGDPGEPGESGQRGPLGPKGAKGEAGVGMVG
PPGQSGPAGLKGDSGLPGSPGPPGSQGISGTPGLPGQRGEAGQPGNPGPSGERGLQGFAG
KAGNPGIAGNPGPPGPPGSAGIPGLKGDKGEVAVGVPGQRGERGDPGPRGEEGRPGMDGE
RGPPGFPGGKGGRGEKGEAGPSGDKGEKGETLLVGGPSGEKGNKGETGERGAKGLQGEKG
TKGQEGPPGVQGLRGEAGERGAPGFQGARGPGGQKGEAGMPGVPGESGTPGKDGLSGMRG
EKGEIGFTGMRGPKGDRGSKGACGPEGQKGERGDPGMNGRSGLPGRKGEAGDVGSPGASG
SPGKEGLVGPKGERGFDGVMGPKGEQGEKGERGPHGIPGPPGSRGVDGPPGLTGPQGPAG
VKGPEGLQGQKGERGPPGPTSVGPRGIPGIPGERGEQGEIGLDGAKGDKGETSMTEDEIR
AYVRSEMSQHCACGGVGEIPTRSAVQAFRSRSSAERSLADDSGHELRVLVNTNDPDYDEN
VYSLENYDDPVEETVDFVPSTNQSQVRKKREVKGEDPCVLPLDEGGCSRYTLRWYFNSQE
GECRPFIYSGCGGNANRYEHKEKCEQSCLQQSRGALGSNSERS
NT seq
9312 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaccggacgttggtggccgtagtgttgctgtccctcccaaacagatctacagca
caaggaacgtgtaataatgtcggtgctgcggatatcgtgttcctggtggacgggtcatcc
agtatcggacgtaccaactttgcccttgtgaggagtttcatggcagggattatcagaccc
tacgccacagcagtgggagccactggtgtccgagtcggagctgtgcagtacagcgacact
gcaagggtggagtttaccttcactacgtatctgcgtggcacagagctgctgagtgctatc
gagaacctcaactataaaggaggaaacactcgcactggagccgggcttaagtacatagca
gataacttcttcaaccccagaaccaccagagatgtgccaaagcttgcgattctcatcacg
gatgggaaatcccaggacaatgttcaggatcctgctgagaaactgcgccgcttaggagtc
aagatctttgctgtcggtataaagagtgcagatcaaagagaactcgagctcatctcctca
cctcctcagagtgaattcacctcctttattgagaagtttagggatctcagctctctgctg
cccaatctctctccacgtgtctgttcggcatctggaggctcctattccagtgacgatgtc
ttcagcggcccgactgacttgaaggttgcagaagtaaccttcaattcaatcaggttcgag
tggacagctgcaggaggacctgttaacaattatttggtccagtacacaccactgtcaggt
ctgggtcagcctttaactgcagagctgagacaggatacagtgtcagccaatgagcagacc
tacttggcacgagacttgcgctcaggcacggactatttggtgtcggttatcgcccagtac
cccaacagcgtgggcgagtccgtgtctgccaaggctcgaactaggtccgtgcagggcgtg
gctgctctgcggttggtacaggcgggattctttactttagctttgtcatgggaccctcct
tctggctctatacagggctacaggatcacctatggacccagaggcgagcccgagtccttg
ctgcgggagaagacgcttggagccgaggccacatctgtaacactggacagtctccaggcg
gacactgaatacattatcaagctgtatcctctctaccctcgtactaacgtcgcacccact
acgctcacagccagcacattgagtttacaaggagtgcagcagctctctgttgttacgatc
tcaaacagcagtgttgaagttcgttggcaaggagtgcaaggcgccagaggatacagggtg
gtctggggcccgttcgtgggaagtgatatagagactgtagaggtgagcggtgacagtgag
gctcacactctggtgaatctgcgaccggacacggagtacatcatcacagtcattgctctg
tataatggagaaacagaagggccagcagcaaatgcacgctttaagatagagcgagcagag
cagcaggttttgagagccgaaacgacgggaccttccagcatccagctgacctggaagttc
atagcagcagccaggggctatcgactggagtggaggaaagagggagagagcagcagggtt
caaagacagacctttccccagagtactacacaatatgagataacaggtcttcagcccagt
accgattacatcataactctgtacacgctgtatgatggacgggaggaatccacaccagcg
atacctttggttaataaagtcaccaacctgcgagtggtggagacaagaggacgcattgta
cggctggcgtggactggagtcgccggtgcgacgaagtacaacatccttattatcaacaaa
cagtctgggtcggaggtgaaacgttccgtttatggaaatcagacgacgtttgaccttgtt
aaccttgtaggaggtgtgtcttatactgtgagggtggctgccttggtgggctacactgag
ggacatcccactgccataaccatcacaccagagtttacatcagcacaagttccggacaag
gtgaagaacctgcgtcttttgaatgtgaacagtcggcggatcaggattggatgggatgct
atcagtgaggccacgggttacagagtcacctggagacaaggcaacagtccagagcagttc
caggaacttggtgcaggaatcacttcctacactatagagcgactacaacctgacgaatct
gtggttgtgggtgtggccgctctgattaatggtcagatcggggacgtggtgacactctcc
accaggacaaacggccacattgggacagtcacaggtttgcagattactgacattggttcc
acgtggattcgcgtatcctgggattcggtatccagagcaaccggatacaaaatcacctgg
cggcgaaatgacggaacggaagactttcagatggtacatgctgatgtcaggtcctacacc
atcagtgggttacagcaaagctctgcctacagaatatctgtctctgccttggcaggctct
cgtgagggaccagcagccactcagaacatccagactgttacagacgaggtcgtggtcgga
cctgttacaaaattacagcacgaggctcgaggagaagtggtgagaatcacctgggttgga
gttcagggcgcaacagcatacagggtgctctggaagagatctgacggtggacaggaacag
tctcagctggttggtggaaatataacatcagtggatctgaggcaactggaaggtggagct
cagtatgatgtccaggttgtggctctggtccagaatagagaaggaccccctgtttctgtc
aaggtcactacaggacccctgtatgatgaacgaccaaaggatgtgcatgttgagcagtta
tctttaggatcactgcgtatatcttggagagcagtgagaggagccgatggataccgaatc
tactggagatcctcacaaggcgaaagtgagacgagtcgtctgataggccgagacttgact
tcgtacacgctggaaggactccgccccggtctgacttacaccatccgattggctgctgtg
ttgaatggaagagaaggtccaccttatgttatttcacagtctactgctgcacagtcatct
gtaacgaacttcagggtagtagacgttacccagaattccgtattgctggcatggaacccc
gcaccaggtgccaccagatacacactgcgatggcaggatgaaagagattcaggtagcatc
cagacgctcaatctgcctgaaacgaccagctcgtttcgtgtgacgaacctgagactgggt
cgcctgtaccggtttactgtacagcccgtcttctacgattctcctgggctcgaggctgat
gtggaagagcgcacagtgtgtgtggatggacgtttggacgtggtgttcctggtccccgcc
actcgtgatcgctctgctttagaggaacccgttttgtccctgcttgcaagtgcagctgga
tctctgccctccatcggagtccgagactcacaggtgtctgtggtggtctacggcgatgag
cctaaagcgcgcttccttctcagtcggcatagcaacagcgaaacccttctcagggagatt
gtctccatcccatttaccgaacgatcaggaaataacataggtcaggccttgtcgtacaca
aaacagtttgtgcttagagagagtgcgggtcgaagatctggttttccaggcgtggtcgtt
atcattgctgataggaaatctgaagatgatatccgccgccttgtgactgaacttaagggg
acgggtgtggccgtgctggctgtcggagttgggcgagcaaacacggaggagctactgctg
gcggttacagacagcagccctcagaatctgctgcaggctcgggatgcagaagatctctat
aggctccaggctgatcttgctgatctgctctgtggtcttgcaagaggaactgttgtaccg
ggttctggttgtactgttcagtgccctccgggtcagaaaggagaactaggacaaaagggt
gagagaggcagtgatggagtgcctgggaggaaaggagagcctggtcgtgacggcacacct
gggcgtgagggcaccaggggacccgagggacccgctggccctccaggaccatcatttaga
ggagaaaaaggagaaagtggagttccaggtttgcaggggaatcccggacttcctggtcgc
ccaggaaaccccggcgctgcaggacctactggtgtgcagggattacctggagtcagagga
gatcctggcgagcctggtagtgctggtttgtccggctcaaagggacagaaaggtgatcgg
ggtgagcctggatctgccaccggagtcgtaccaggacgtaaaggagagccaggtctatct
gggctacctggtactccaggaagaccgggcatagacggggcaaagggagaatcgggaatt
cctggggtgccggggaaagatggccgccctggaatagcgggaacgcccgggctctcgata
aagggtgaaaaaggaagtcgtggcgaaccaggcattcctggagggggcagtgggccagca
attaaaggagaaaagggagaaccaggacgtcttggacttacaggtcctcaaggccctact
ggattgactggacagaagggagccaaaggagaatctggagagagcattaagggcagtcca
ggacccccaggagcaggaggagagccgggtgaccggggtccaagaggtcctcctggtgaa
attggaagcaagggagaccgtggacaggctggagagcccggctcacagggtgacaggggt
gaaagaggaccacccggtccaccaggggataagggtgatgttggtagaccagggctcatg
ggaccacaaggccctcggggtttgtcaggggcaaatggtcttccgggggaaaagggagct
gatggagcaaaaggagaaccgggtggtggcgcaggttcacttggaaagaaaggagagcag
ggccagaaaggagcttcaggtcctgagggtcctccaggtgaaaagggagacatggggcag
aaaggagataggggtcttcctggaataggactacctggtctgcttggacctaaaggggaa
ccaggtgatcgggggcttcctggacttgctggacgaattggtgcaaagggaaaccagggt
gaatcaggagagcgaggagaggcgggcaatcccgggcctgcaggtccggctggacccaaa
gggaaagatggcctaaaaggtgacagaggagaagacggaattccgggggaatccggcttg
tccgggaagccaggagaacgtggactcaggggtgttccaggactccaaggccaacctgga
gaaaagggggacatgggtgatcctggagagcatggacgaaatggttctccaggtcccatt
ggaccacgaggacaaaagggagatcagggaatccaaggtcccccaggaccccctggagat
gcgggagatggggttacttttcacaaaggagacaaaggagacaagggtgagtctggtgac
cctggggaacatggaagtaaaggtctacagggagaagcaggaacaccgggcacaccagga
ttacggggagctgagggtcagcgtggaccagtaggagccagaggagatccaggagaaaga
ggaagtccaggagagaagggagaaagaggagctgctggattggatggacgtcctggtcag
gatgggaaacctgggccacctggatcacctggtttaaggggtgatcctgggaaaacggga
gaccctggtagagatggcttagcaggacttcgaggacctcaggggcctccaggacctgta
ggacctccaggggctgcaggcacaaacggaaaaccaggagaggacggaaaagctggatct
acaggaaaacctggtgaagatggcgtccctggtgaagatggcagaaagggtgaaaaagga
gattcaggacctccaggaagaaatggtcaggatgggatcaaaggggatcgtggcattgca
ggacccactggcccctctggtcctgctggaccaccaggggttcctggaaacattggacct
ccaggacaggtgatatatgttaaaggagctgatatatcacctatccctggacctcgagga
ccaccaggaccacctggacaacctggcattccaggagatgcaggtaccaggggtgaaaga
ggaccacaaggaacaaaaggagaacatggagatccaggagaagatggttcacctggaaaa
ccagggacttcagtggatgtgaagagagcactttctgactttggcatcgagatcagagat
ctacaggtggtgatggaaaagaaagatcttctgatcagggaaacagataaaggagccaaa
ggggataaaggagattcaggaccccaaggcccacctggtgcagatggtgctcgagggttt
ccaggagagcgaggacaaaagggtgatcatggtcaaaagggagagacgggccctcagggc
ccaacaggtcgagctattggagaaagaggaccagagggtcctcctggacaagcaggtgag
cctggaaaacctggcatacctggagttccaggtcgagctggtgaacttggagagtctggc
aaatcaggagataagggagagagaggcgagaagggagagaaaggcgagacgggtaagcct
ggggtaaatggtggagtaggacctcctggacctaagggtgactccatagttcagtctgtt
cctgggccacggggtttgcaaggaccacaaggaattaaaggggaggatggtgctcaagga
cctcctggaactaaaggtgaacggggagtagccggtttccgtggagagaaaggggaaaga
ggagaagtaggagaaaagggcagagatggcctccctggtttagctggggaacctggaaaa
cagggacaggatggaaagccgggcttgcctgggttcccaggagtcttgggcagaccggga
aacccgggagagccaggaattcgaggaccaactggaccgaccggtttgaatggatctcca
ggacaaccaggtgtgaagggtgaccaaggagaggcaggagtaggagttcaaggcccccca
ggaccacaaggcatccgaggattgcccggacttacaggcactccaggagctattgggcct
caaggacctccaggcctgtcaggacaaacgggagaaggaggaaaacctggggttcctggt
agagatggcgtacctggaaaagaaggaacgcccggcttaccaggaaagcagggaatagct
ggaccggtgggacccccagggacgaaaggcgagcaaggtgacagcgggccacctggaaaa
tcggtagccggaccccctggagtgaagggtgagcggggtcctcctggtgaaacattgcct
ggagtagcaggagaaaggggctcacctggactgcagggtattaaaggagataagggacca
gctggaatcaaaggtgacaaaggtggaagcggtgacccgggggaacctggtgaaagtgga
caaagaggaccactggggccaaaaggagccaaaggtgaagcaggtgtcggtatggttggt
cctccaggacaatctggacctgcaggcttgaagggtgattctggactcccaggctctcca
ggtccacctggatctcaaggtatatcaggaacaccaggactccctggccaaagaggagaa
gcaggccagccaggaaatccaggaccttcaggagagaggggactgcaaggctttgcagga
aaagcaggaaacccagggattgccggtaatcctggaccgcctggacctccggggagtgca
ggtatacctggtcttaaaggggataaaggtgaggttgctgttggagttccaggacagaga
ggagagagaggagatcccgggcctcggggagaagagggacgacctggaatggacggagag
agaggccctccgggatttccaggtggaaaaggaggcagaggagaaaagggtgaagcagga
ccttctggagataaaggagagaagggagaaactctcttggtgggtgggccttctggggag
aaaggaaacaagggtgaaacaggagaacgaggtgcaaagggattacaaggtgaaaagggc
actaaaggtcaagagggaccaccaggggtacagggtctgcgtggagaggccggtgagagg
ggggcacctgggtttcagggtgcccgtggtccaggaggacagaagggagaagcgggaatg
ccaggagttccaggagaatctggcacacctggaaaagatgggctctctggcatgagaggt
gagaagggagagatcggattcaccggcatgcgaggacccaagggagaccgtggatccaag
ggtgcgtgtggaccagagggacaaaaaggagaaagaggggatcctggaatgaacggaaga
tcaggtttacctggaagaaagggagaggcgggtgatgtgggatctccaggagcttcaggg
agtccaggaaaagagggtctcgtcggccctaaaggtgagcgaggttttgatggtgtaatg
ggaccgaagggagaacaaggagaaaaaggtgaacggggcccccatggcatccctggacca
cctggttcccgaggtgttgatggacccccgggcctgactggtcctcagggacctgctgga
gttaaaggtcctgaaggactgcaggggcagaagggtgaacgaggtcctccaggccctact
tcggtcggccctcgtggtatcccagggatcccaggagaaagaggagagcagggagaaatt
ggtcttgatggagcgaagggagataaaggagaaaccagcatgacggaggacgagatccgg
gcgtatgttcgctctgagatgagtcagcactgtgcctgtggaggtgttggagaaattccg
acgcgttcggcagtgcaggctttccgaagtcgctcgtctgccgagcgctcactagccgac
gattcgggtcacgagctgcgtgttctggtaaacacaaacgacccagattacgatgagaat
gtttactctttggagaactacgatgatccggtggaggagaccgttgactttgtgccctcg
accaatcagagccaagtgagaaagaagagagaggttaaaggtgaagacccgtgcgtcttg
ccgttggatgagggtgggtgctccagatacactctgcgctggtactttaattctcaggag
ggtgagtgcagacccttcatctacagcggctgtggaggaaacgctaaccgctacgaacac
aaagagaagtgtgaacaaagctgcctacaacaaagcagaggtgctctggggtcgaatagt
gaacgctcatga
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integrated database retrieval system
