Silurus meridionalis (southern catfish): 124385283
Help
Entry
124385283 CDS
T08004
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124385283 (trpc1)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
124385283 (trpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
124385283
NCBI-ProteinID:
XP_046704471
LinkDB
All DBs
Position
4:36402509..36445910
Genome browser
AA seq
799 aa
AA seq
DB search
MRLGLGVLSYPLPVLMAALYRGPHTASPRSHLALKDVREVQEETTLDEKLFLLACEKGDF
YMVKKLLEEKPHGELNINCVDVLGRDAVTIAIENENLDILQLLLDHGCQTTDALLVAIDS
EVVGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLK
QDISLPRPHAVGCECMLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFEL
SADLKELSLVEVEFRTDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSNEDHVNKRGL
LEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGEMASYRRKHTGLKLLTVLSVTLL
WPLLSVCYLLGPRSRVGHIIHTPFVKFIIHSASYLTFLLLLNLYSLVYNEDKKNTMGPAL
EFIDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNHLSFVMNSLYLATFALKIVAHSKF
ENGHTDRKDWDASHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGK
FLGLFLLVLFSFTIGLTQLYGKDQKDPSKSKDDNMDCEGIFCEQQSNDAFQTFMGTCYAL
FWYIFSLAHVALFVTRISYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKSFRQIAN
HEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSLSKWICSHTSTGKMKRQ
NSLKEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNE
MRDLLGFRTSKYAMFYPRS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggcctcggcgtgctgtcgtatccgctccccgtgctgatggcggcgctgtac
cggggcccgcacaccgcctctccgcgctcccacctggcgctcaaggacgtgcgagaggtt
caggaggagaccacgctggatgagaagctcttcttgttggcctgcgagaagggtgatttc
tacatggtgaagaagctgctggaggaaaaaccccatggtgagctgaacatcaactgcgtg
gacgtgttggggagagacgcagtcaccattgccatcgagaatgagaacctggacatcctg
cagctgctcctggaccacggatgccagacgacagatgctcttttggtggccatcgattcg
gaagtggtaggagctgttgatattcttctcaaccaccgacccagacgatcctccaaacct
tctattgcgaaactgatgcagcggattcagaacccggaatattccaccaccatggacgtg
gctcctgtcatcctggctgctcacaggaacaactacgagattctgaccatgctcctgaag
caggatatctcgcttcccagacctcacgctgtgggctgcgagtgtatgctctgcaacgcc
aagaacaagaaggacagcctgcgtcactccaggtttcggctggacatttatcgctgccta
gcgagtccatcacttatcatgctgacagaggaagaccctattctccgagcatttgagctc
agcgctgaccttaaggagctcagcttggttgaggtggagttcaggactgattatgaagaa
ctagccaagcagtgcaagatgtttgccaaggacctgttagcccaggcacggaactcccgc
gagctcgaagtcatcctgaaccacacaagcaacgaggatcacgtgaataaaagaggatta
ctagaggagcgcatgaacctcagtcgactcaaactcgccatcaaatacaaccagaaagag
ttcgtggcacagtctaactgtcaacagttcctgaacacagtgtggttcggtgagatggcg
agttaccggcgtaagcacacggggttgaagctgctgacggttctgagcgtaactttgctc
tggcctctactctcagtgtgctacctgcttgggccacgctcacgtgtcggccacatcatc
cacacgccctttgtcaagttcatcatccacagcgcttcttaccttacctttctcctactg
cttaacctctactcactggtctacaacgaagacaagaagaacaccatgggcccagcactg
gagtttatcgactacctgctcattctctggatcataggaatggtgtggtcagatgtgaag
cgtttgtggtacgaaggcctagaggacttcctggaagagtcgaggaaccatctaagtttt
gtgatgaattctctgtacctggccaccttcgcactgaaaatagtggctcacagcaagttt
gagaacggacacactgaccgaaaagactgggacgcctctcaccccatcctggtggccgaa
ggacttttcgccttcgccaacgtcctgagctacttgcgtctgttcttcatgtacaccacc
agctctatcctcggccctctacagatctcaatgggtcagatgctgcaggagtttggaaag
tttctcggcctgtttctgttggtgctcttctccttcacaatcggcctgactcagctttac
ggaaaggaccagaaggatccatccaagagcaaagacgacaacatggactgcgaaggaatc
ttctgcgaacagcagagcaatgacgccttccaaacgtttatggggacgtgttatgcgctc
ttctggtatatcttctctctggcccatgtggcgttgtttgtgaccaggatcagctacacg
gaggagctgcgctcgttcgtgggtgccctcatcgtcggcacgtacaacattgtcgtcgtg
atcgttctcaccaagcttctagtggccatgctgcacaagagcttcagacagatcgctaac
catgaggataaagaatggaaatttgcccgggccaagctctggctcagctactttgatgat
aaatgcacattgcctccaccgtttaacatcctgccatctccgaagacgctgtgctactta
gtgacgagcctgagcaagtggatctgttcccacacgtctactggaaagatgaagagacaa
aacagccttaaggagtggaagaacctgaaacagaaaagggacgagaactaccagaagatt
atgtgctgcctagtgcatcgttacctgacgtctacgcggcagaagatgcagagcaccgac
caggccacggtggaaaacctcaatgacctacggcaagacctgtccaagttccgcaacgag
atgagagacctgctcggctttcgcacatccaaatacgccatgttctatcccagaagctaa
DBGET
integrated database retrieval system
