Silurus meridionalis (southern catfish): 124385672
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Entry
124385672 CDS
T08004
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124385672 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
smeo01009
]
124385672 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
smeo04515
]
124385672 (pcdh20)
Protein phosphatases and associated proteins [BR:
smeo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124385672 (pcdh20)
Cell adhesion molecules [BR:
smeo04515
]
Cadherins
Protocadherins
124385672 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
124385672
NCBI-ProteinID:
XP_046704821
LinkDB
All DBs
Position
5:8786462..8791575
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AA seq
836 aa
AA seq
DB search
MNMVCLLQKVLLVASVRQIICHTLTLSTLEERPEGIKIGTLSTAYSPPYQLLARSYFQVN
EETGDVYTTDQMIDRETLCPSQEGGYCTISADALVGAEQELIKITIIVEDINDNAPFFET
TEIRLKIPEDTSVGIRVLLDDKAQDEDIGSNAQIRYHLEGAKGFFTVAQDSSSIELIVER
ELDRESQNEHCMVLVAVDSGSVPLSATVSLIVTVLDVDDQCPQFNPDNPRTVSVPGGVTR
GTTVTQVQAIDPDLGSNSQITYSFSLHISDRAKELFHLDRNTGRISIAMDMKLDSPEEHV
LKVVVNSPPCPVEQTQVTVYLQPLRSPEPTIEIKYVAQYRNQTIILPENEPPTLLALLEL
SDVSSIQRVLSLETDSKAFTLKAQAGNYLLSTLKPLDFEVCSKYLLTIVIREAQGKHVHA
KKQIKVEIEDVNDNAPQFEESYYQVEIEENNEPGISLLQVSASDADSQLYGKVSYRLIHN
NPAIFNIDEVTGVVSALESLDREQQGEYILTLLARDNGSPPLETFTSVAVKVLDQNDNPP
TFVTPRLVFFISEGIPYLAHVGNIVIVDPDEGDNGKVVDMQVLGTHVPFAIDMSQLALRC
TGEVDREKHDYYELILLAIDGGTPQRSSTASVTVFVEDVNDNQPQVLLPSNNFSCQTISP
NTRVGSIITKIYAIDHDSGMNSDISYQIIARRPINPSPFQIDPHTGNITLAQQLVSRDYS
MHHLLIKVSDSGKPAPLQATVWVHILVNEMSMQCNLTTVPPYFPPDTEPPLPPKPYNLTE
SCTKLPWLLLLCGLGMMVFSICMFLVTFIICMKQKHLRKRTCKRDRTIEHELEYLK
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggtgtgtctgttacagaaagtgcttctcgtggcatctgtcagacagatcata
tgccacactctgaccctttcgacactggaggaacgaccggaaggaattaagataggcacc
ctaagcacagcgtactctccaccataccagctgcttgcaagatcatattttcaagtgaat
gaggaaactggggatgtgtacacgacagatcagatgattgaccgagagactctgtgtcca
tcacaggagggtggctactgtaccatctcagctgatgccctagtgggcgccgaacaagaa
ctaattaagataactattattgtggaggatataaatgacaatgctcctttttttgaaaca
actgaaattcgtttaaaaattccagaggatacaagtgttgggataagagtgcttttagat
gacaaagctcaggacgaggacatcggcagtaatgcgcagataaggtatcatttagaaggt
gctaaaggattcttcacagtggctcaggacagttcttcaattgagctgattgttgaaaga
gagctggaccgtgaatctcaaaacgagcactgcatggtccttgttgctgtggacagtgga
tctgtgccactaagtgctacggtgtctttaattgttacagtgctcgatgttgatgatcag
tgcccgcagttcaaccctgataaccctcgcactgtttcagtgccaggaggagtgacccgg
ggaacaacagtgacccaggttcaagcaatagatccagaccttggcagcaacagtcagatc
acttactccttcagtctccacatctccgatcgggccaaagaacttttccacctggacaga
aacacaggcaggatcagtatagctatggatatgaagctagacagcccggaggaacatgtg
ttaaaagtggttgttaatagcccaccttgccctgtcgagcaaactcaggtaactgtatat
ctgcagccattacgtagcccagagccaactattgagatcaagtatgtggcacagtataga
aaccaaactataatattaccggagaatgagccaccgactctcctggctcttttagagctg
agcgacgtctcaagtatccaaagagttctgtccttagagacagacagcaaagctttcact
ttgaaagcccaagcaggcaactatctactttcaaccttaaagccactagattttgaggtg
tgtagcaaataccttcttactattgttataagagaagcccaaggcaaacatgtgcatgca
aagaaacagataaaagtggagattgaagacgtgaatgataatgcaccacagtttgaggag
agttattatcaggtggagatagaggaaaacaatgagcctggcatctctttactacaagtc
agtgcaagtgatgcagatagccagctttatggcaaagtgtcatataggctgatacataat
aaccctgctatctttaatattgatgaagtgacaggtgtagtgtctgctttagaatcattg
gacagagaacaacagggagaatacattctcactctgttggccagggacaatggttctcct
ccattagagacctttacatcagtggccgtaaaggtcctggatcaaaatgataacccgcca
acttttgtcacaccacgcttagtcttcttcatctccgaaggtattccatacctagctcat
gttggaaacattgtaattgtggatccagatgagggagataatggaaaagtggtggatatg
caagtactaggcacacacgttcccttcgccatagatatgtcccagttggcacttcgctgt
acaggtgaggtggaccgagagaagcatgactattatgagctgatcctgctggctatagat
ggaggcactcctcagcgttcctccactgcatctgtaactgtttttgtcgaggatgtaaat
gataaccagccccaggtgctcctgccaagcaacaacttctcctgccagaccatatcccct
aataccagggttggcagcatcatcaccaaaatatatgctattgaccatgactcaggcatg
aattctgatatttcatatcagattatagccagaaggccaatcaatcccagcccatttcag
attgatccacacacagggaacatcacactggcacagcagcttgtgagcagagactacagt
atgcatcaccttttaatcaaagtcagtgatagcgggaaacctgcacctcttcaggccaca
gtgtgggttcatatactggtcaatgagatgtccatgcagtgcaacctaaccactgttccc
ccatattttccaccagacacagagcccccactgccaccgaaaccatataacctaacagag
agttgtacaaaactgccttggctcctgctgctctgtggcttgggtatgatggtgttctcc
atatgcatgtttttggtcacttttataatttgcatgaaacaaaaacacttgcggaaaaga
acatgtaaaagagatcgcacaatagaacatgaactggaatatttaaagtaa
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