Silurus meridionalis (southern catfish): 124385722
Help
Entry
124385722 CDS
T08004
Symbol
acanb
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
smeo00535
]
124385722 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124385722 (acanb)
04091 Lectins [BR:
smeo04091
]
124385722 (acanb)
Proteoglycans [BR:
smeo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124385722 (acanb)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124385722 (acanb)
Lectins [BR:
smeo04091
]
C-Type lectins
Lecticans
124385722 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
UL45
I-set
Ig_3
PGDH_inter
Motif
Other DBs
NCBI-GeneID:
124385722
NCBI-ProteinID:
XP_046704920
LinkDB
All DBs
Position
5:complement(21834165..21845748)
Genome browser
AA seq
1302 aa
AA seq
DB search
MAAFLLLCACLSISSATIMFGEINDEDSTLSVSIPLGQPLRPLLGGKVVIPCYFRDNAFY
NPEATTVAPLSQRIKWSYIYQGKISLILVAFRGAVHIEPHYLDRVAMVNYPSVTTDVTIE
ISELRSSDSGTYRCEVIQDTEDNYDSVEMNVQGIVFHYRPITSRYSLTFDMAKTACIENS
AVIATPEQLQAAYDDGFHQCDAGWLSDQTVRYPIHEPREPCWGDKEDFPGIRTYGIRDDN
ETYDVYCFAEKMSGRVFYSMSIKKFTFSEASEQCGKLGAKLATTGQLYLAWKAGMDVCNA
GWLADGSVRYPINIARPQCGGGLLGVRTVYRFPNQTGYPLPDSHFDVICFDGEYEVPDLY
TDVYATTDFHTPVPDISMATDFQSIGPDVSITTDLHTYVPDIYMTTDSEFSVGTITSNPV
PFPESVTTGGEVRGELITHEPWVTTMVTPPSFSSTKSDDVIAVATARPALGFEIPRDNAS
IVPEFEGVVFYYQSGLQHYAFTFHEAQEICRKQGAEIATPNQLQKAYEAGLHQCNAGWLQ
DQSVRYPNAYPEECPGDQQHASGVISHGFKPAHEHYDVYCYINQIKGDVFHVNSLANLTY
QEAEDYCHSQNATLATTGELYAAWSQGFHNCNPGWLSDGSVRYPVQMPYLSCNANKTGVY
TIYANPDQTGFPDIYSKYDAYCIRGSVAGSYYGSDSVFPIEGVSGNSLPIAEGSSSGQPS
GDVSISGFASAEGSSSGFSSEYAYSSGRSSAEGSSTSFPSGDVSGSTDFSGDVSGSDDSH
DGSGIIVSFKDSVERLSAEGSTIKGAQEALDGSAVIYTSGMESGDISGDHSGSGDGSGQD
KSGSGDLSSGSGSGDRIILVDHVVTYIPFPQPKTEQEFVRRQPEVSGFSGIHSGDITSGS
GFSGVPSGDVISGSGFSGVSSGDIISGSEVSGVPSGDVISGSGFGGVTSGAVISASGFGG
VSSGAVISGSGFSRVPSDGVISSSGFSGVPSGDVLSSPGLSGIHSGDIMNGSEFSEIHNK
TYESTVFFSGPSHEEDIHGRDELLLDLEDVNGTDVSLINTTSTTTLTFTSSPLAVHLMPS
TIDQPTVTEAHGCADSWVEFEGSCYIYFTERMNWTSAEQHCQELNSHLISITFKKEQMFV
NSHIWEYQWIGLSDRDQQNEFSWTDGSPLEFVNWRPNQSESLNINEAEDCVAMIRTELGQ
WTKVPCNYYLPFTCKSTLVKCSIPPVVQNARMLGNSREYYPINSIIRYQCDPGFRQRHHS
VIRCMPDGQWEEPQVECVESTTNNRLQKRSLKRHSKAVSSRT
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttttcttctactgtgtgcctgcctcagcatctcctcagcaacaataatgttt
ggagagataaatgatgaggacagtaccctcagtgttagcatccccctggggcagccgcta
cgccccctgttaggcgggaaggtggtcattccctgttattttcgggacaacgcattctac
aatcctgaagcaactaccgttgctccactatcacaacgcatcaagtggagctacatttac
caaggcaaaataagcctcatacttgtggcctttaggggagcagtacacattgagccacat
tatttggaccgggtggccatggtgaactatccctcagttaccacagatgtcactatagag
atctcagagctgcgctccagcgattctgggacataccgatgtgaggtaattcaggacact
gaggacaactacgactcagtggagatgaatgttcaaggcattgtgttccactatcggccc
ataaccagtcgctatagcttgacttttgacatggcaaaaacagcttgtatcgagaacagt
gctgttattgcaacccctgaacagcttcaagctgcttatgatgatgggtttcatcaatgt
gatgcaggctggctttcagatcaaactgtcaggtatcccattcatgagccaagggagcct
tgctggggagacaaggaagattttccgggtatacgtacatatggaattagagatgataat
gagacctacgatgtgtattgctttgcagagaagatgtctggcagagtcttctactccatg
tctattaaaaagtttacattttctgaggcatctgaacagtgtgggaagctcggagccaaa
ctggccaccacagggcaactctacttggcctggaaagctggaatggatgtgtgcaatgct
ggctggttagcagatggaagtgtgagataccctatcaacatcgcccgcccacagtgtggt
gggggtctcctgggtgtacggacggtgtaccgttttccaaatcagacaggttacccccta
ccagactcccactttgatgtcatctgctttgatggagagtatgaagtacctgatctttac
actgatgtgtatgcaaccacagacttccacaccccagtacctgacatttccatggccaca
gacttccaatcaataggacctgatgtttcaattaccacagacctccatacctacgtacct
gatatttacatgaccacagactcagagtttagtgtgggcaccatcacctctaatccagtc
ccctttcctgaaagtgtcactactgggggtgaagttcgaggggagttgataactcatgag
ccctgggttaccacaatggtaacacccccttccttttctagcacaaaaagtgatgatgtt
attgctgtagctacagcacgtcctgctctgggcttcgagatacccagagataatgccagt
attgtgccagaatttgaaggagtggtcttctactaccaatcgggtttacagcattatgct
tttacctttcatgaggctcaggagatttgtcgcaagcagggagccgaaatagccacacca
aatcagttgcagaaagcttatgaggctggcttgcatcaatgcaatgctggctggctccag
gatcagtctgtcagataccctaatgcctatcctgaggagtgccctggagatcaacagcat
gcttcaggggttatctctcatgggtttaagcctgcacatgaacactatgatgtgtattgc
tacatcaaccaaataaagggggacgtcttccacgtcaattccttggcaaacctcacctat
caagaggcagaggattactgccatagccagaatgccacccttgctacaacaggggagttg
tatgcagcctggagtcaaggcttccataactgtaacccaggctggttgtctgatggcagt
gtccgctacccagttcaaatgccatatctaagctgtaatgcaaataaaacaggagtttat
actatttatgctaaccctgaccagactggatttccagacatttactccaaatatgatgct
tactgtataagaggatctgtggcaggaagttattatggatccgacagtgtgttccccatt
gaaggtgtatctggcaatagtcttcccattgctgaaggttccagcagtggccaacccagt
ggagatgtatctattagtggctttgccagtgctgaaggttccagtagtggcttctccagt
gaatatgcatacagcagtggccgttcttctgctgaaggttccagtactagcttccccagt
ggagatgtgtcaggcagcacagacttcagtggggatgtgtctggatctgatgacagtcat
gatggctcaggcatcattgtcagcttcaaggacagtgtagaaaggctctctgcagaggga
tctaccataaaaggggctcaagaagcattggacggaagtgcagtaatttatacctcagga
atggaatctggcgacatcagtggagaccattcaggatcaggtgatggatctggacaggat
aaaagtgggtctggtgacctgtcctccgggtctggcagtggagataggattatattggtt
gaccatgtagtgacctatataccatttccacagccaaaaacagagcaagaatttgttcga
aggcaaccagaagttagcggattcagtgggatccacagtggtgacataacaagtggttct
gggtttagtggagtgcccagtggtgatgtcataagtggctctggatttagtggagtgtcc
agcggtgacatcataagtggctctgaagtcagtggtgtgcccagtggtgatgtcataagt
ggctctggttttggtggagtgaccagtggtgctgtcataagtgcctctggatttggtgga
gtgtccagtggtgctgttataagtggctctggtttcagtagagtccccagtgatggtgtc
atcagtagctctggattcagtggagtgcctagtggtgatgtcttaagtagccctggactc
agtggtatccatagtggtgatatcatgaatggatctgaatttagtgaaattcacaacaaa
acctatgaatccactgttttcttttctggtccttctcatgaagaggatatacatggcaga
gacgaattgcttctagatttggaggatgttaatggcactgatgtttcacttatcaatacc
accagtacaaccacattaacatttacatccagtcctttggcagtgcacctgatgccatcc
accatagaccagcccactgttactgaggcacatggatgtgcagacagctgggtggaattt
gaaggtagctgctatatctactttactgaaaggatgaattggacatctgctgaacagcac
tgccaagagctaaactctcatttgattagcatcactttcaagaaagagcaaatgtttgtc
aacagtcacatttgggaataccagtggattggactcagtgacagagaccagcaaaatgag
ttcagctggacagatggaagccctctggaatttgtaaattggagaccaaaccagtcagaa
agcttaaatattaatgaggcagaagactgtgtagcaatgattaggactgagcttggccag
tggactaaggtgccttgtaactactatctgcccttcacatgcaaaagcacacttgtcaaa
tgctccatacctccggtggttcaaaatgccaggatgttaggaaacagtagggagtactac
ccaatcaactccatcatccgctaccagtgtgaccctggattcagacagcgccaccattct
gtgatacgctgcatgccagacggccaatgggaagagcctcaagtggaatgtgtagaaagt
accacaaacaacagacttcaaaaaagatcccttaagaggcattccaaagcagtcagcagt
cgaacatga
DBGET
integrated database retrieval system
