Silurus meridionalis (southern catfish): 124385820
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Entry
124385820 CDS
T08004
Symbol
atg2a
Name
(RefSeq) autophagy-related protein 2 homolog A
KO
K17906
autophagy-related protein 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04136
Autophagy - other
smeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124385820 (atg2a)
04136 Autophagy - other
124385820 (atg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124385820 (atg2a)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124385820 (atg2a)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
124385820 (atg2a)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
124385820 (atg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2-VPS13_C
Chorein_N
VPS13_DH-like
ATG2_CAD
Motif
Other DBs
NCBI-GeneID:
124385820
NCBI-ProteinID:
XP_046705141
LinkDB
All DBs
Position
5:18251016..18277356
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AA seq
2008 aa
AA seq
DB search
MSRWLFPWSGSIKKRACRYLLQHYLGHFLEERLSLDQLSLDLYNGSGVIKEINLDVWAVN
ELLESLAAPLEIVEGFVQSIKVTIPWAALVTDHCTLEVTGLQITCRPKDRTSGAWDSQGW
SSCMTSSMQLAKECLKDPPEASEEPPAPLEGLEMFAQTIETVLRRIKVTFLDTIVRIEHH
PLDSKDGIALEMQIKRLDYCDEAVRDSSQTVPVDIHQPPAFLHKILQLNSVQLFYETLGE
PQSLIPEHTVVSEDEERDYAPKPLRPHPGPLLIGSCSGFMETTVKIKQNDMLPGPKLELD
GKVGCLHLLLSPSQITNLMDLLTALCIETEGSSNMHGGGGGSSHSRPLGSDDLRLIEEDL
SKQISVDTVDQDLKLNTETYVSTLENGEMFYSMVPGCMTSSMMSNRSGSELSDSDMESSV
HSQSSLASTNPLSPQGILNCPRRYPVPGTLSSLPQCSRPPRHSTHTGQSEPMKPDCLLRL
TLGGLTLTLLEQEPAQDPGDLSTMAKVSQLFFHELAFFKDSMFSERDFENLRGSFAKACP
HSHLRLTGAAVQVACEMRSSGRHAHSMTSDLSFSRLELLECLWEPGKIEYTELLQFKNAG
HFTVGATARPCAQIHHSLTEKQQRKSGSKQRVMRRESSLRVELGELTTEIDLDILGRLDN
IIHALSHCPTQPNKPANTKPHLSELQSSLVLLSPYAVMKLRFPIPDLRPSDQRRPIREQA
VRKEVLSLEMCNLELKSHQGSDLQQQGPYTSTAKLTKVLEASFSDLHGVYEGWEGVSFPC
IRVQKGSNAENPDSTPKIVVHVSGAADSDGRGTVGVGLNRDLGLGFVSMENPCELREKNS
SPFSSNRTMFETEEMVIPADPEEMNEFQAQCVAQSQYVVDITLPLAYILLPSKEAFQSIY
NRINNDLLMWEPPLPHQPPPKMSHSPLQQRRSEDDEFQLCKSAFRLDSDSEEDEPQVCLA
SEQRKRGQPEPQPNHELSFLCLTVLVGKGRLQTLTDSKNEAGRRVEQFHGELLLDFEDGK
IFSVTQHQNDPNLNFLTIESKKVELYHKAEVPDSPIPARLEMPKFTPPNHLDLTIYPTEV
GVSSVGRREAGGQMLSTAIKITLDLQRNVKEFLVALRLQGATLRHRMALTNYSWHEQLVD
FLDVIDDDILGYTPPAIITVLHTHLVTCAVDYRPLYLPLRVLFTAESFSLSSNIIVDTAT
FHLRFILDDSALYLTDKCESETVDLKRDYVCVLDIDLLELAITTWKGNNTGKLTQPLFEL
RCSNNVVHVHSCADSCAALVNMLQYLISQGDLHPPPRHTSPTEIAGQKLPLSEAPTTLPP
CPPAETAEINQCDLTDALIDTERTLPEADREFGSPSSVKRGSPISVYLFPGEGPKSSSSA
LDGDESDLDQLVVTATEVHADMMLEECSECSTDNDDFCILEAPGIGIPPKDGEPVVKVLC
ESPIKVRDGYFSRPRGSSDLLRAPAHFAMPQSRVVLREVSVVWHLYGGKDFGGKPTSVHT
QHSHRGRAAPVGAHGSPSRSSGSSRPQNSWRWVGGSGRQHSLLMEIQLTKVSFQHESYPV
VVPTAGSGQDVDAAGLGEQPLSRQVFIVQELEVRDRLASSQMNKFLYLYTSESMPRRAHS
NMLTVKALQVLPESGLGGPECCLRISLLPLRLNIDQDALFFLKDFFSSMTAGINPYLPVD
PAAEVKADTTQKPSEEAEFGTGLGPDLTTSVETTYSEQSSSSAGSSSSSDQPIYFREFRF
TSEVPIWLDYQGKHVAIEQGTFAGILIGLAQLNCSELKLKRLCCRHGLLGVDKVIQYAVN
EWLTDIRKNQLPGILGGVGPMHSVVQLFHGVRDLFWMPIEQYRKDGRIIRGLQRGAASFG
TSTASAALELSNRLVQAIQATAETVYDILSPTPPLTRCIAEGRPATRPRRTPQPADLREG
VAKAYDTVREGVIDTAQTLCDVASRGHEQKGLPGAVGGVLRQIPPTVVRPLIVASEATSN
LLGGMRNQIKPDARKEDFLKWRTEDSQE
NT seq
6027 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtggctcttcccttggtcgggctcgataaagaagcgggcctgtcgctacctt
ttacagcattacctcggccacttcttggaggaacgtttgagtttggaccagctgagtttg
gacttgtacaatggcagcggtgtcattaaagaaatcaacctcgacgtgtgggcagttaat
gagctcctggagtcccttgcagcccctctggagattgtagaaggttttgtgcagagtata
aaagtgacaatcccatgggcagcacttgttactgaccactgcacacttgaagtcactggg
ctacagataacatgcagacccaaggacagaaccagtggtgcctgggactcccaaggctgg
tcttcatgtatgacttccagcatgcagctggccaaggagtgtctgaaggacccacctgag
gcatcagaagaaccgcccgctcctttagaggggctggaaatgtttgcacagactattgag
acagttctgcggcggataaaagtcacttttttggacactatagtaagaattgagcaccat
cctcttgactctaaggatgggatcgccttagagatgcaaattaaacggctggattactgt
gatgaagctgtgagggactccagtcaaacagtgcctgtagatatccaccagcctccagcc
tttctgcataaaattctccagctcaactctgtacagctgttttatgagactcttggagag
ccacagagtcttattcctgaacatactgtggtcagtgaggatgaagagagagactacgca
ccaaagcccttacggcctcatcctgggcctctactcattggaagctgctctggtttcatg
gagaccactgttaaaatcaagcagaatgacatgctcccagggcccaagctggagctagat
ggtaaggtgggctgtctacaccttttactctctcccagtcagattactaacctaatggac
cttctgactgcactctgcattgagacagagggcagcagtaacatgcatggtgggggtggt
ggtagttctcacagtaggccactgggttcagatgatctgaggttgatagaggaggacctc
agtaagcaaatcagtgtggatacagtagaccaagatctgaagctaaacacagagacttac
gtcagcactttggagaatggagagatgttttactctatggtgcctggttgtatgactagc
agtatgatgtctaaccgctcaggaagcgagctctcagacagtgacatggagtcttcagta
cacagccaaagcagcctggcttcaacaaaccctctgtctccacagggaatacttaattgc
cccagacgttatcctgtaccaggaaccttatctagtttgcctcaatgtagcaggccacca
cggcattcaacacacactggccagtcagaacccatgaagcctgactgcttgcttcggctc
actctgggtgggttgactctcactcttctggaacaggagccagctcaagatcctggagat
ctgtccacaatggctaaggtgtcacagctgttcttccatgagcttgctttcttcaaagac
agcatgttcagtgagagagactttgagaacttgaggggtagctttgctaaagcgtgccct
cactcacatctcaggctaacaggagcagctgtacaggtagcatgtgagatgcgtagctct
gggcggcatgcccattccatgacctctgacctgtccttcagcaggctggaactgctggag
tgtctgtgggagccaggcaagatagagtacactgagctactgcagttcaagaatgctggt
cacttcactgtgggagcaactgccagaccatgtgcccaaattcaccactccctgacagaa
aagcagcaacgcaagagtggatcaaagcagcgagtaatgcgtagggagagctcactacgt
gtagagctgggtgagcttaccactgagatagacctggacatactgggcagactggacaac
atcatacatgccctgagccactgtcccacacagccaaataagccagcaaacactaagcct
catttgtcagagctgcaatcgtcccttgttctcctctccccctatgctgtaatgaagctt
cgcttccccatccctgaccttcgaccttcagaccagagaagacccattagagagcaagca
gtgcgtaaagaggtcctgagtctggagatgtgcaatctagagctgaagtctcatcagggg
tcagatctacagcagcaggggccatacacctcaacagctaaactcaccaaggttttggaa
gctagcttcagtgatctgcatggagtgtatgagggctgggagggcgtatctttcccttgt
atccgagtacaaaagggctccaatgcagagaacccagacagcacacccaaaattgtggtg
catgtaagtggggcagcagactcagatggtagaggcactgtaggtgtgggtttaaacagg
gatttgggacttggctttgtgtctatggaaaatccctgtgagctacgagagaaaaacagc
tcccccttctcctctaaccgtaccatgtttgagacagaagagatggtaatccccgcagat
ccagaggaaatgaacgaatttcaggcgcagtgtgtggctcagagtcagtatgtggtggat
attacactccctttggcctacatccttttgcccagtaaagaagcctttcaaagcatctac
aacaggatcaacaatgatttgttaatgtgggagcccccacttccccatcagccccctcct
aagatgtctcacagccccttacagcagcgcagatctgaggacgatgaatttcagctctgc
aaatcagccttcagacttgattctgactcggaagaggatgaaccacaggtctgtttagcc
agtgaacaaaggaaaagagggcagcctgagccccaaccaaatcatgagcttagttttctc
tgcttaactgtactggttggcaagggtcgtctgcaaactctcaccgacagtaagaatgaa
gcaggacgcagggtggaacagttccatggagaattgctgctagactttgaagacgggaag
atttttagtgttacccagcaccagaatgatccaaatctaaactttttgactatagagagc
aaaaaagttgaactctatcataaagctgaagtcccagactcccctatcccagcacgacta
gaaatgcccaagtttacacccccaaaccatctggacctgaccatttatcccacagaagtg
ggggtgagcagtgtggggcgcagagaagcaggtggtcagatgttgtctactgctatcaaa
attacactagacctccaacgcaatgtcaaggagttcctggttgcattacggctccagggg
gctactttaagacatcgcatggcattaacaaattacagttggcatgagcagttggtcgat
ttcctggatgtcattgatgatgatattttaggatacacacctcctgccatcatcacagtg
ttacatacgcacctggttacttgtgctgttgactacaggcccctctatcttccattgcga
gtgttgtttacagcagaatcgttttctctgtccagtaatatcattgtggacactgccact
tttcacttgaggttcatcctggatgactctgcattgtatctcactgataagtgtgaaagt
gagacagtggatttgaaaagagattatgtgtgtgtgttagacattgacctgttagagctg
gccataactacctggaaaggcaacaacactggcaaactgactcagccactgttcgagcta
cgctgttcaaataatgtggttcacgtgcactcttgtgcagactcctgtgctgctttagtg
aatatgttacagtacctgatctcccaaggtgaccttcacccacctcctcgtcatacttct
ccaactgagattgctggacagaagctcccgctctcagaagctcctacaactttaccacca
tgtccaccagcagagacagctgaaattaaccagtgtgatcttactgatgctctgattgac
acagaacgaacgctgccagaagcagatagggaatttggctctccttcctcagtaaagcga
ggctcacctatctcagtgtatttatttcccggggaaggcccaaaatccagctcctctgca
ttagacggggatgagtctgatcttgatcaactggtggttacagctactgaagttcatgct
gatatgatgttggaggaatgttctgaatgttccacggacaatgatgacttctgtatttta
gaggctcctggaataggcattcctcctaaagatggagaaccggtggttaaagtgttgtgt
gagagtcctataaaggtgcgtgatggctatttctctcggccacggggcagctcggatttg
ctacgtgctcctgctcactttgctatgcctcagagcagggtagtactccgagaggtatca
gtagtctggcatctctatggaggcaaagactttggaggaaaaccaacctctgttcacact
caacacagtcacaggggccgggcagcacctgtaggagcccatggttctccttcacgctct
tctggttcttctagaccacagaactcatggcgctgggtgggaggcagtggcagacagcac
tcactgctcatggaaatacaactgacaaaggtcagttttcaacacgagtcctaccctgtg
gttgtgcctactgcaggctcagggcaggatgtggacgcggcaggcttgggagagcagcct
ctctcacggcaggtgttcattgtgcaagaactagaggtgcgtgacaggctagcctcctcc
cagatgaacaaattcctctacctgtataccagcgaaagcatgccgcggagagcccactcc
aacatgttaacagtaaaggctctgcaggtacttcccgaatctgggttaggaggaccagag
tgctgcctaagaatcagcctgctgccccttcgactcaacattgaccaagatgcccttttc
tttctgaaagacttcttcagtagcatgactgctgggattaatccgtatttacctgttgat
ccagctgcagaggtgaaagcagacactactcagaaaccatcagaggaagcagagtttggt
actggtctgggtcctgatctcaccacttctgtagagacgacgtatagtgagcagagctct
tcctctgctggctcctcctcttcctctgaccagccaatttatttccgagagttccgtttc
acctcagaagttcccatatggctggactaccaagggaagcatgtggccatcgaacaggga
acatttgcagggattcttattggcctggctcaactgaactgctcagagctgaagctgaag
aggctgtgctgtagacacggactgctgggtgttgataaagtcattcaatatgctgtgaac
gagtggctcactgacatcaggaagaaccagttaccaggcatactgggaggtgttggtcca
atgcactctgtggttcagctgtttcatggggtacgggatctgttctggatgccaattgag
cagtacaggaaagatggacgtattattcgtggtctccagagaggggcagcgtcctttggc
acttctacagcttcggctgctctggagctaagcaacagactggtgcaagccatacaggcc
acagcagaaacagtgtatgacatcctgtccccaactccacccctaactcgctgcatcgca
gaagggcgccctgccactcggcctagacgcaccccacaaccagctgatctcagagaaggt
gtggctaaggcctatgacacagtcagagagggagtaatagacactgctcagaccctgtgt
gatgtggcctcccgtggacacgagcagaaaggtcttccaggagcagtgggcggggttctg
cgtcagatccctcccactgtggtgcgtcccttaatagtagcctctgaagccacctccaat
ctgcttggaggcatgcggaaccaaatcaaaccggatgcacggaaagaggactttttaaaa
tggcgcacagaagacagccaagagtga
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integrated database retrieval system