Silurus meridionalis (southern catfish): 124385854
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Entry
124385854 CDS
T08004
Symbol
prom1a
Name
(RefSeq) prominin-1-A isoform X1
KO
K06532
prominin 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124385854 (prom1a)
04090 CD molecules [BR:
smeo04090
]
124385854 (prom1a)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
124385854 (prom1a)
CD molecules [BR:
smeo04090
]
Proteins
124385854 (prom1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Prominin
Cyt_bd_oxida_II
Ada3
PIN_8
Tweety
Motif
Other DBs
NCBI-GeneID:
124385854
NCBI-ProteinID:
XP_046705220
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Position
5:4577330..4639077
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AA seq
887 aa
AA seq
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MRTPALTLLLLAACCWCCCSGSPPAAPPAADASLHFGSVPAGVYETVAYYEPGPIGLLFN
MMRAFLHVVQPNPFPQDLVIRVAKDKFGAIKSDYQKPENIVLTLQVIYYELGFVVCAVVG
ILFIVLVPLVGLLFCMCRCCDNCGGEMHQRQKKNADCQRGLLTTLLLTTTFIITAGVLCA
YAANQNLSSQLKTMKRLVNSNIRDLYTFANNTPTQIDHLISQYGTAKNQVLCDLDNVGQL
LGGRIHEELGKVVLPALDEAQNMAGVIKDTKEALENVTVTLAVLQEGTVQLESNLSRVRM
DISNALDDPACADSLSPIVHICVNILSSLSQLEISANYSALPGVSEQLAKVNDVLKTDLA
QIVHQGFLAFNDTPNMVTDQTRNVAEGVRGLLDGIGNNITRFSKLFPVQTTVNNVTNIIS
HTHSQIEDLYPEIDKMDFYRWISCITLCCMVALIVVFNFLGLLCGILGFDRHASPTSRGC
VSNTGGNLLMAGVGFSFMFSWVLMAVVTATFVLGGNVEKLVCEPFHSRELFKVLDCPNLV
NPSWKHFIPGYLFNNPEMDLTVENIYSNCKENRGIYSALHLDKVFNISALFSPSLYTKDV
SKKFDSLKVDLKTIVLLNTDGKHNLINFTEAGIKDIDFAAYMEELNKGVTRVDLLTFASD
LDAKADQLNNGPVQTSIKGHANTLRQIYAKQVVPLQQSMKYVTARNTLNQSIRFLERTAT
DLSNKISEILQAVETAQHLITHNATFTVNQESEKYKQSLIGYFEQYINWIKTSLMMEVAT
CKPVSNIVDTAEILACGFLFDSMNTFWFGLGCSALFLLPSIILSVRLAKFYRRMDTEDVY
DDMEIGNNGYYNEHVQGIQNPVIASLPAYDTMTRFPRASAPPRHGDW
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcgcacaccggccctgacgcttctcctcctcgccgcctgctgctggtgctgctgcagc
ggctcacctcctgcagctcctcccgccgcagacgcgtcgttacatttcggctctgtacct
gcaggagtttatgaaaccgtggcgtattacgaaccggggccgatcggcctgctgttcaac
atgatgcgcgccttcctgcacgtggtccagccgaacccgtttcctcaagatctcgtcatc
cgagtggcaaaggacaagttcggagccatcaagtctgactaccagaagccagagaacatt
gttctgacactgcaggtgatttactatgagctgggctttgtggtgtgtgcggtcgtgggg
attctcttcatcgtgctcgtgcccctggtcggactgctcttctgcatgtgtcgctgctgc
gataactgcggaggagagatgcaccagagacaaaagaaaaatgcagactgccagagagga
ctgctcaccacgctcctgcttaccaccacctttattatcaccgctggggtcctgtgtgca
tatgcagccaatcagaacctgagttctcagttaaagaccatgaagaggctcgtcaacagt
aatattcgagacttgtacacctttgccaataacacaccaacgcaaatcgatcacctgata
tctcaatatggaaccgctaagaaccaagtgctctgtgatctggacaatgtaggtcagttg
ttgggtggaaggatacatgaagagctgggaaaagttgtgctgcctgccctggatgaggca
cagaacatggctggagtgattaaggacactaaagaagctctagagaatgtgaccgtgacg
ttggcggttcttcaagagggtacggtgcagctggaatccaacctgagccgagtgcgaatg
gacatctcgaatgccctggacgaccccgcgtgcgccgattcgctgtcacccatagttcat
atctgcgtcaacatcctcagctcgctcagccaactggagatcagcgctaactactcagcg
ctgcctggtgtgagtgagcagttggccaaagtgaacgacgttttgaagactgacctcgcc
cagatagttcaccaggggttcttagccttcaatgacaccccaaacatggtgacagaccag
accagaaatgtggctgaaggagtccgaggtttgttggacggcattgggaacaacatcacc
agattttcgaagctgtttccggtgcagactactgtaaacaacgtgaccaatatcatcagc
cacacacactctcaaatcgaggatctttacccggagatcgacaaaatggacttctacagg
tggatcagctgtatcacactgtgctgcatggtggcgcttatcgttgtcttcaacttcctg
ggtcttctgtgtggaatcctgggatttgacagacatgcctctccgactagccgtggctgt
gtgtcgaacacaggaggaaacctgctgatggctggtgtgggcttcagcttcatgttctcc
tgggttctcatggcagtggtgacagcgacgtttgtgctaggggggaatgtcgagaagctg
gtctgtgaacctttccactccagagagctgttcaaggtgttggactgtccaaatctggtg
aacccttcatggaagcacttcatccctggctacctttttaacaatcccgaaatggatctc
accgtggaaaacatctacagtaactgtaaggagaaccgtgggatttattctgccctccat
ctggacaaagtgttcaacatctcagccttgttcagccccagcttgtacactaaggacgtg
tctaagaagtttgacagcctgaaggtggacctgaagacgatcgtcctgttgaacacagac
ggcaaacacaacctcatcaacttcactgaggccggcattaaggacatcgactttgcagcg
tatatggaggagctcaataaaggagtgacccgtgttgacttgctgacattcgccagtgac
ctggacgctaaagctgaccaactgaataatggacctgtacagacttctatcaagggccac
gccaacacgctgcgtcagatctacgccaagcaggtcgtccctcttcagcagtccatgaaa
tatgttactgcaaggaacactctgaaccagagcatcaggtttctggagaggaccgccact
gatctatcaaacaaaatatcagaaatacttcaagcggttgaaacggcacagcatctcatc
actcacaacgcaacatttactgtcaatcaggaaagtgagaaatacaagcagtccctgatt
ggctacttcgaacagtatatcaactggatcaagacatcactgatgatggaagtggccacg
tgcaaacctgttagtaacatcgtagacactgcagagattctggcctgtggcttcttattt
gattcaatgaacacgttctggttcggtttgggctgctctgctctcttcctgcttcccagc
atcatcctgtcagtaaggctggcaaagttctaccgccgtatggacaccgaggacgtctac
gacgatatggaaattggtaataatggttattataatgaacatgtacaaggtatccaaaac
cctgtaattgcaagcctccctgcctatgacactatgactcgattcccacgagcttcggca
ccccctcgccatggcgactggtga
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