Silurus meridionalis (southern catfish): 124385954
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Entry
124385954 CDS
T08004
Symbol
sh3tc2
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 2 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124385954 (sh3tc2)
Membrane trafficking [BR:
smeo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
124385954 (sh3tc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_1
TPR_2
TPR_MalT
SH3_2
TPR_10
TPR_14
TPR_15
Motif
Other DBs
NCBI-GeneID:
124385954
NCBI-ProteinID:
XP_046705427
LinkDB
All DBs
Position
5:complement(13694128..13716006)
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AA seq
1462 aa
AA seq
DB search
MLAGTRRTEVQSDKVDLSIGLQDDHWGWYISTPELNTLWEEPPYVLTRTNELFPGNDVMA
SGDEEVETEAEVEGESITGESYWKRKEALSTVSLAVGDHFSSDVILLFSGRRRSNLEPDS
VLQEALRTRLRVVESNSQDVIQLFKDLSARLVSVHAEKDYFVITFKTVEEIWKFSTYLAL
GYVARCLENFLCDQSLWLDPLLLSDVEICVTVDEEHLATLYLGLLLQEGSFFAKALVNSE
QYIEDEDKLIYKKNDLVIVKDIGQQSMWEGTLLSTGQHGLVPVKAMQPLPYPFYQWFLRK
YHGNAGGFSSTKAQCDQPIVTGTYVAVVDHYSMAEDELHFSQGDLIEVEGLLIRSLNTFI
GRHTSGGQIGFVDIAHVRPENVKSLSGQLVFLTEEETVALSQFNPCVEQCHTGLLDKLFF
TDISTVYRLDRLDDSDFTYIKNQPKQEQKNAEDARKSIIMEHSHTPSYHSSPQPSFYASQ
SCLDRENEPFSFSLEDTFKEMDKYQEDPPFMDEGMWDNEEAEIVDPILTLLNLDHFQDSF
HALYDLSYSFLETVFGGLPVDEVLLHLESLREGAKKGRMVWAHRRACFLLGRLCAKKLKF
SQARVYFEEALNVPVAGFNDIPLLIALYTNLTAVYLKQKMTDKLIHTLEKASALILCLPM
HNFCSLDEFELLKPILRKAIVDNDMHLEARACYLILCLFLQNKRIEEALPFVERLQFLTL
TLSAEEGRPIRPVDLNWILCRLYHKKYLPYLALASLSLDSGQGHSLDTAFQKIELFLKNS
VRLNPCWKDGSALLPAQMVVYLQQALSIANCEEHLKTQRDLCLCLASVYQQYGSLEKAVL
CAQQAVQAGRCINEEECFEASVLLAWLLVITEEPDRAQSTLQPLLNSLNSTARSAQHGVV
HNLLALCLRKQGKITEAAKYFHCALKISQDNGNKHNEALALANLGCLALSVGAPGLAESF
LLRSLYLFQFLSESPSDEEHVQTLLWLGRSYKDRGECQKVRLSYEMGLLIAISAKNLHSQ
MVVSKVLSRLYADLMLYGQCIIYYEHCVGLARELKDKRLEGEYLEILSNLYLSLNTEKSS
LKSLDYTKQSLRISIDLGKKQEESETWLQVGRIYYLIGEDELADMYLQAAVKTALRINDP
CFAMNIYEEAGDVFFKGHRNRLAAISFFRDGGLPFARYLNNVHSEFRLLCKLSELLLKEG
QHQEALQYATLSVQISTSTGVRLNEKVSYHRLASIYFTLKQYELAENYYLKALSLSPTAL
EHAEEARYYVKVYCRLADLTLHKIKDAYDAMGYFHLALAAALEDGGSIHSRYIIYMKLAE
IHANYLPDVKLSQTYMDSARNLKMELAGPTDSVDAKDDYMNHGAAEYANAEPISCSNEEP
KNFRSRSNTLVGSYVRDKSHSITSIKEAEAVPADCMCGEDMDICNPDGTNSGLGQPTNSE
IRHTNQRLHTSHTDSGLLCTEF
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgctggcaggaaccagaaggacagaggtacagagtgacaaggtcgacttatcaatagga
ttgcaggatgatcattggggctggtatatatcaactcctgagctcaatacattatgggaa
gagcccccatatgttctaacaagaaccaatgagctctttccaggaaatgatgtcatggcc
tctggagatgaggaagtggaaacagaggcagaggtggagggtgagagcattactggtgag
agttactggaagaggaaggaagctctcagcactgtctccttggctgtaggagatcacttc
tcttcagatgtgatactgctgttcagtgggagaaggcgctccaatttggaaccagacagc
gtgcttcaggaagcactgcgcactagactaagggttgtagagagcaacagccaagatgta
attcagctttttaaagatctctctgcacgcttggtttcagtgcatgctgaaaaagactac
tttgttattacatttaagactgtggaggaaatctggaagttttctacatacctggctcta
ggatatgtggcaagatgcttggaaaacttcttgtgtgaccagtctttgtggctggaccct
ctgttgctaagtgatgtagagatttgtgtgacggtagatgaggaacaccttgccaccctt
tatctgggtctcctacttcaagaaggttcattctttgctaaagctctggttaacagtgag
cagtatatagaggatgaagacaaacttatctacaagaagaatgaccttgttattgtgaag
gatattggacagcagtccatgtgggagggaacactgctgtctactggtcagcatggccta
gtgcctgttaaagcaatgcagcctctgccctaccctttttatcagtggtttcttaggaag
taccatggcaatgcaggagggttttcatccactaaagcccaatgtgaccaacctatagta
acaggaacctacgtagcagtagtagaccattactcaatggctgaagatgaactgcacttc
agtcaaggagatctgatagaggttgaaggcttgcttattagatcactgaatacattcatt
gggagacacacctcgggtggacaaataggatttgttgacattgctcatgtgagacctgaa
aatgtcaaatcactcagtggacaattggtctttctgactgaggaggagacagtggccctc
tcccagtttaacccctgcgttgaacagtgccacactggtttattggacaaactcttcttc
actgacatcagcactgtttacagattagacagacttgatgactctgatttcacctatatc
aaaaaccaaccaaagcaagaacagaaaaacgcagaagatgccaggaagagcattataatg
gaacacagtcatacaccatcctatcactcttctcctcaaccttccttttatgcttctcaa
agttgcctagacagggaaaatgagccattctccttcagcctggaggacactttcaaagaa
atggacaagtatcaggaagatcccccctttatggatgaaggcatgtgggacaatgaagaa
gctgagattgttgatcccatcttaaccctcctcaacctggaccacttccaggactctttt
catgcactttatgacctgtcctactccttcttggagacagtttttggtggtcttccagtg
gatgaggtgcttctgcatctagagagcttgcgggaaggagcaaagaaaggaaggatggtg
tgggcccatcggagagcctgcttcctgttgggcaggttgtgtgccaaaaaacttaagttc
tcacaggctcgagtctactttgaagaggcactaaatgtccctgtagctggctttaatgac
atacctctattgattgccctgtataccaatcttacagctgtgtacctgaagcaaaagatg
acagacaaactgattcatacattagagaaagcgagtgcccttatactgtgcctaccaatg
cataacttctgctctcttgacgagtttgaactgctcaaacccattctacgcaaagctatt
gttgacaatgatatgcacctcgaggcacgggcttgctatctaatcctctgtctatttttg
caaaacaaaaggattgaggaggccttgccttttgtggaaagacttcagttcctcactcta
acgctctcagcagaagaaggacggcctataaggccagttgatctcaattggatactgtgc
aggctctaccacaaaaagtatctgccgtatcttgcgttagcctctctcagtctagattca
ggtcaaggtcattctttggatactgcttttcaaaagattgaacttttcctaaaaaactca
gtcagactgaatccttgttggaaggatggctctgctttgcttccagctcagatggtggtt
taccttcagcaggcactgtcaatagccaactgtgaagaacacctgaagacccagagagac
ctttgtctatgtttggccagtgtctaccagcagtatggatctttggaaaaagcagttctc
tgtgcacaacaagcagtgcaggcaggaagatgcattaatgaggaggagtgctttgaggca
tcagtgctgctggcctggctcttagtgattacagaggaaccagacagagcccaatctact
ttgcaacctctccttaactctctgaatagtacagccaggtcagcacagcatggagtggtc
cacaatctacttgcactatgtcttcgcaaacaggggaagataacagaagcagcaaagtac
tttcactgtgctctcaagatttcacaggataatgggaacaagcataatgaagctctggct
ctggctaacctagggtgcctagccttatcagttggggctccaggactggcagagagtttt
ttgctcagatctctgtaccttttccagtttctctctgagagcccctcagatgaagagcat
gttcagactctgctgtggctaggtagaagctacaaagataggggagaatgtcaaaaggtt
aggctgtcctatgaaatgggtcttctgattgccattagtgccaagaacttgcacagtcag
atggttgtatcaaaggtgctcagtcgcctttatgccgacttaatgttatatgggcaatgt
ataatttactatgaacactgtgtggggctcgccagggaactgaaggataaacgtctggaa
ggagagtacctggagattctcagtaatctctacttatcacttaacactgaaaagtcctca
ctgaagtctctggactacacaaagcaaagtctaaggatttccatagacttaggaaagaaa
caggaggagtctgagacctggctgcaagtgggccgtatctactacttgattggggaggat
gaattggcagacatgtatcttcaggcagctgtaaagacagctctaaggattaatgatcca
tgctttgctatgaacatctatgaagaggccggagatgtcttcttcaaaggacacagaaac
cgacttgctgctatttcattttttagagatgggggtctgccatttgcaagatatcttaac
aatgtgcattcagagttcaggcttttgtgtaagctctccgaattgttgctgaaggaaggt
cagcaccaggaagccctgcagtacgctacactttcagtgcaaattagcacttcaactggt
gttcgcctgaatgagaaggtgtcctaccatcgcctggcctcaatctacttcactctgaag
cagtatgagctggcagagaattactatttgaaggcactttccctctctcccactgcactg
gagcatgcagaagaggctcgctactatgttaaagtttactgcagactagctgatctaacc
ctccacaagataaaggatgcttatgatgccatgggatatttccatttagccctggcagca
gctctggaagatggagggagcattcattccaggtacataatttacatgaaactggcagag
atccatgctaactacttacctgatgtgaagctgagtcagacttatatggacagcgcacgg
aacttaaagatggaactggcagggcccacagactccgttgatgcaaaggatgactatatg
aaccatggtgctgcagagtatgctaacgctgaacctatcagttgttcaaatgaagagccg
aagaacttcagaagtagaagcaatactcttgtaggatcctatgtgagggacaaaagccat
tcaataacttctataaaggaagcagaggctgttccagctgattgcatgtgtggagaggat
atggacatctgtaacccagatgggactaacagtgggcttggacaacctacaaattctgaa
ataaggcacacaaatcaaagacttcataccagtcacacagattctggcttactatgtaca
gaattttga
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