Silurus meridionalis (southern catfish): 124385972
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Entry
124385972 CDS
T08004
Name
(RefSeq) LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smeo01002
]
124385972
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124385972
Enzymes [BR:
smeo01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
124385972
Peptidases and inhibitors [BR:
smeo01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
124385972
Ubiquitin system [BR:
smeo04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
124385972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Motif
Other DBs
NCBI-GeneID:
124385972
NCBI-ProteinID:
XP_046705477
LinkDB
All DBs
Position
1:complement(8374840..8416471)
Genome browser
AA seq
2555 aa
AA seq
DB search
MTATTRGSPMGNSDNQGQSQAPDGQSQAPLPQNQTLSPNSSNETSPVSPPEGQAQGQGDA
QQAQEEEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKCEAC
QRFFQDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVVKLSQDWFPLLELLAM
ATNPHCKFHIYNGTRPSESVPAGLQLADDELFARXPDPRSPKGWLVDLINKFGTLGGFQI
LHDRFMSGQTLNVQIIAALIKPFGQCYEFLTLHTVKRFFLPVIEMVPQFLENLTDEELKK
EAKNEAKNDALSMIIKSLKNLVSRLPGQEETVKNLEILRLKMILRLLQISSFNGKMNALN
EVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKI
LRFVIKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDYLFDCFKASW
TNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKIL
DYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHV
FYRHDLINQLQHNHALVTLVAENLSAYMENMRQFSKEHVGFDPQTVRVGSRYSHVQEVQE
RLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCDREACFKWYSKLMGDEPDLDPDIN
RDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWR
VVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHEDFIQSCFDRLKASYDTLCVLDGD
KDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERTILPMSRAFRGKHITLVVRFPNQG
RQVDDLDIWSHTNDTIGSVRRCILNRIKANSTHTKIELFIGGEIVDPADDRKLIGQLNLK
DKTLITAKLTQVSAHMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSQHLR
YISFLWQVADLGCTLNMPLLRDGARVLMKLIPPDSTTVENLRAICLDHAKLGENSLSPTL
DSRFFGPSPSQVLYLTEVVYALLMPASGTLGEDASDFQYNFLKSGGLPLVLGMLTRNNFL
PNTDMETRRGAYLNALKIGKLLLTAIGFGHVKAVAEACQPVVEGTNPTSPINQATHDQAL
VLQNALQNIPNPASECMLRNVAIRLAQQIFDEASKYIPDISVIRAVQKIVWASGCGSIQL
VFSSSEEISKIYEKTNAGNEPDMEDEQVCCEALETMTLCFALMPTALDTLSKEKAWQTFI
IDLLLHCQSKSVRQMAQEQFFLMATRCCMGHRPLLFFITLLFTVLGSTAKERAKHAGDYF
TLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKRIKDEVKGTGETGVEETILEGHLGITKE
LLAFQTPEKKFYIGCEKGGANLIKELIDDFIFPASNVFLQYVKTGEFPAEQAIPVCSTPA
SINAGFELLVALAVGCVRNLKQIVDTLTEMYYQGCESLTEWEYLPPVGPRPTKGFVGLKN
AGATCYMNSVIQQLYMIPSIRNGILAIEGAGSDVDDDMSGDEKQDGESNVDPRDEVFNYH
QQFDDKPSLNKAEDRKEYNIGVLRHLQVIFGHLAASRLQYFVPRGFWKQFRLWGEPVNLR
EQHDALEFFNSLVDSLDEALKALGHPSMLSSVLGGSFADQKICQGCPHRYECEESFTTLN
VDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRFD
YDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLESNEVTSESQVVHQNAPLDPELGGSS
RYRLVGVLVHSGQASGGHYYSYIVQRHSNGADGQRDRWYKFDDGDVTECKMDDDEEMKNQ
CFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTVSVDGELLKQIAEMTLVSKPH
HLKMPSAIECRVRKQNVQFMHSRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPEAEE
IAVISIQLAARFLFTTGFHTKKVVRGPASDWYDALCILLRHSKNVRSWLAHNVLFAFPTR
FSEYLLECPSAEVRGAFSKIIVFIAHFSLQDGSCPAPVTSPGSSTQACDNMTLSDHLLRA
VLNLLRREVSEHGRHLQQYFNLFVMYANLGLAEKTQLLKLSVPATFMLVALDEGPGPPIK
YQYAELSKLYTVVSQLLRCCDVSSRMQSSINGNAPLPNPYGDSNLTAPIMPIQQLVAEIL
FVRASYVKKIIEDCSNSEETVKLLRFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDL
LLQILLIEDSWQTHRIHNVLKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVGLFSNCS
VAYQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYSYNNWSPPVQSNETSNGYFLER
SHSARMTLAKACELCPEEEPDDQEAPDDHESSPPEDTALYPHSPGTQYQQPNNHTHGQPY
TGPAAQHMNNPQRAPQRPQDSWEGTEEVVPEQSKE
NT seq
7668 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaccacccggggctcccctatggggaacagtgacaaccagggacaaagccaa
gccccggatggccagagtcaagctcctctaccccagaaccagacactttctcccaattct
tccaatgaaacatctccagtgagccccccggaaggacaggcacaggggcaaggtgatgct
cagcaggcacaggaagaggaggaaccggcatttccccacacagacctggccaagctggat
gatatgatcaaccggcctcgctgggtggttccagtcttgccaaagggggaactagaagtt
ctacttgaagctgctatagatctaagtaaaaaagggcttgatgtgaagtgcgaggcatgt
cagaggttttttcaagatggtctgacgatctcgttcacaaaaattctgacagatgaggca
gtgagtggttggaaatttgaaattcatagatgtatcatcaataacacacatcggctggta
gagctatgtgtagtcaagctgtctcaggattggtttccattacttgagcttctagccatg
gcaaccaacccccactgcaaatttcacatctacaacggaacacgcccatctgagagtgta
cctgctggtctccagcttgctgatgatgagctctttgcacgcnccccagacccacgttca
cctaaaggctggctggtggaccttataaataaattcggcacacttggaggtttccagatc
ctgcatgatcgtttcatgagcggccagactcttaatgtgcagattattgcagctctcata
aagccatttggtcagtgctatgagtttttgacattgcacacagtgaagaggtttttcttg
cctgtgatcgaaatggttccacagtttctggagaatctgacagatgaagaacttaagaag
gaagctaagaatgaggctaaaaatgacgctctttctatgataatcaaatccttgaagaac
ctagtgtcacgattaccaggccaagaagaaaccgtcaagaacttagaaatcttaaggtta
aaaatgatccttaggttattgcaaatttcctcttttaatggaaaaatgaatgcactaaat
gaagtaaacaaggtgatctcaagtgtttcatattacacccatcgccatggcaacccagag
gaagaggagtggctaactgctgagcggatggcggaatggattcagcagaataacattctg
tctatcgttctgagggacagcttgcaccagcctcagtatgtggagaaactagagaagata
ttgcgctttgtaataaaagaaaaagcacttactttacaagacctggacaatatctgggct
gcacaggctggaaagcatgaggccattgtgaagaatgtccatgacctgttggctaagttg
gcctgggatttctcaccagagcagcttgactacctgtttgactgcttcaaggcaagctgg
acgaatgcaagtaaaaagcagagagagaagctgttggagttgatccgccggctggcagag
gacgacaaggatggtgtgatggctcacaaggttctaaacctgctgtggaacctagcgcac
agtgacgatgtccctgttgatattatggatcaggccctaagtgcccacattaagattttg
gactacagttgttcccaggatcgggacacgcagaagattcagtggatagaccgttttatc
gaagaactgcgaaccaatgataagtgggtgatcccagctttaaaacagatcagagagatc
tgcagtctgtttggagaggcccctcaaaatctcagccagacgcagaggagtcctcacgta
ttctaccgacatgacctgatcaaccagctgcagcacaaccatgcactagtcacactagtt
gcagagaacctgtctgcctacatggagaatatgcgacaattctctaaagagcatgtaggt
tttgaccctcagacagttcgcgtgggcagtcgctacagccatgtgcaagaagttcaggag
agactcaacttcttgagattcctgttgaaggatgggcagttatggttgtgtgcacctcaa
gcgaagcagatttggaagtgcctggcagagaatgcagtgttcctctgtgaccgtgaggct
tgtttcaaatggtactccaaactcatgggtgacgagcccgaccttgacccagacatcaac
agggacttctttgagaacaatgtgctgcagctggacccctcactactgacagaaaatggg
atgaagtgctttgagcgtttctttaaggcggtgaattgcagggaaggcaagctagtagcc
aaacgcagggcatacatgatggacgatttggaacttattggccttgactacctctggagg
gttgtgattcaaggaagcgatgatattgccagtcgggcaatagatctgctaaaagagatt
tacacaaaccttggaccaaaattacaagttaatcaggtagagattcatgaagactttata
cagtcgtgttttgaccgcctgaaggcctcatacgacacactttgtgtattggatggagac
aaggacagcataaattgtgctcgacaggaggccattcgtatggtcagagtgttgactgtg
cttaaagagtatattaacgagtgtgacagtgactaccatgaggagagaaccattcttccc
atgtctcgagcatttcgtggaaagcacattaccctagtggtgcggtttcctaaccaaggt
cggcaggtggatgacctggatatttggtctcatactaacgacaccattggctcagtacgc
cgctgtatcttgaatcgcatcaaagccaatagtacacataccaaaattgagcttttcatt
ggaggagagattgtggatccagctgatgaccgcaagttaataggacaactcaatcttaaa
gacaaaactctgatcactgctaagttgacacaagtcagcgcccacatgccctccagtccc
gatagctcctcagactcgtccacgggctcacctgggaaccatggaaaccactacagtgat
gggcccaacccagaggtggagagctgcctgccaggcgtgatcatgtcgcagcatctgcgg
tatatctcattcctttggcaagttgctgatttgggctgcactttaaacatgcctttgctg
cgggacggagccagggttctaatgaagctcatacctccagacagcactacagtggagaac
ctgcgtgcaatctgtctggatcatgctaagctgggagagaatagtctcagtcccacttta
gattctcgcttcttcggcccctcaccctcacaagttctctatctcactgaggttgtttat
gcccttcttatgccagccagtggcactctgggtgaagatgccagtgatttccagtacaac
tttcttaaaagtggtggtctcccattggtactgggcatgctcaccaggaacaactttctg
cccaacacagacatggagacacgtcgtggggcctacttaaatgctctgaaaattggaaag
ctcttgctcactgccataggtttcgggcatgttaaagcagtggcagaggcttgtcagcct
gtggtggagggcaccaaccctacatcaccaataaatcaggcaacccatgaccaagctctg
gtgcttcagaatgctctccagaacatccctaaccctgcctcagaatgcatgttgcgcaac
gtggccatccgactggctcagcagatctttgacgaggcatcaaagtacatcccagatatc
agtgtgatacgagcagtgcagaaaattgtgtgggcttcaggctgtgggagcatccagcta
gtcttcagctccagtgaggagattagtaagatatatgagaagactaatgctggtaatgag
ccagatatggaggacgagcaggtgtgctgtgaggctctggagaccatgacactctgtttc
gctctcatgccaacggccctggatacactcagcaaagagaaggcttggcagaccttcatc
atcgacttgctcttgcactgccagagcaagtcagtgcgtcagatggcacaggagcagttt
ttcctcatggccaccagatgttgtatggggcaccggcccctccttttcttcattacactt
ctcttcactgttttaggaagcactgcaaaggaaagagcaaagcatgctggtgattacttc
accctcttgaggcacttacttaactatgcatacaacagcaacataaacctccctaatgca
gaagtcttgctaaacaatgaaattgattggttaaaaagaatcaaggatgaagtaaaggga
acaggggagactggggtggaagaaaccattcttgaaggtcacctgggcattaccaaggaa
cttttagcattccagacccctgagaaaaaattctatattggatgtgaaaagggtggggcc
aaccttatcaaggagcttatagatgatttcatcttcccagcctctaacgtgtttctgcaa
tatgtcaagactggagagttccctgctgagcaggcgatcccagtatgcagcactcctgcc
tccattaatgctggctttgaactacttgtggcccttgctgtgggatgtgtacgcaatctt
aaacagattgttgacactctcacagaaatgtattaccaaggctgtgagtctctcacggag
tgggaatatctcccacctgtggggccgcgacccactaaaggatttgtagggctgaagaat
gccggagccacatgctatatgaactcggtgatccagcagttgtacatgattccctccatc
cgaaatggcattctggccatcgagggtgctggcagtgatgtagacgatgatatgtctgga
gatgaaaaacaggacggcgagagtaatgtggaccccagggatgaagtgttcaattatcat
cagcaatttgatgacaagccctctctcaataaggccgaggatcgtaaggagtacaatatc
ggagtgctgcgccacctgcaagtcatatttggccaccttgctgcgtcccggctacagtac
tttgtacctagaggattctggaagcagttcaggttgtggggggagccagtgaatctgagg
gaacagcatgatgcgctggagttttttaactctctggtagacagcctggatgaagcactg
aaggcccttggtcatcccagcatgcttagcagtgtcctgggtggctcatttgcagaccag
aaaatttgtcagggctgtccacacagatatgagtgtgaagaatcctttacaacactgaat
gtagacatcagaaaccatcaaaacctcctagattccttggaacagtatgttaaaggggac
ttgctggaaggagccaatgcttatcattgtgagaagtgcaacaagaaggttgatacagtg
aagcggttactgattaagaagcttcctccagtactggccattcagctgaagcgttttgac
tatgattgggagcgcgagtgtgccataaagtttaatgattactttgagttcccacgtgag
ttagacatggagccatacactgtggcaggagtggccaagctggagagcaatgaggttact
tcagagagccaagttgtccaccagaatgcacccttagacccggagctgggcggaagctct
cgttaccggttagtaggagtgctggttcactcaggtcaggccagcggtggccattactac
tcctacattgtccaacgacacagcaacggtgcagatggccagcgagatcgctggtataag
tttgatgatggtgacgtcactgagtgcaagatggatgatgatgaggagatgaagaaccag
tgctttggtggagagtacatgggagaggtatttgaccacatgatgaagcgcatgtcatac
cggcgccaaaagcgctggtggaacgcttacatcctgttctatgagcgcatggacacagtc
agcgtcgatggcgaactgttgaagcagatagcggagatgacgttggtgtcaaaacctcac
catctcaagatgccctcagctatcgagtgcagagtgcgcaagcagaacgtgcagttcatg
cacagccgcatgcagtacagccttgagtacttccagtttattaaaaagctgctcacctgc
aatagtgtctacctgaacccaccaccaggtcaagatcacttgctacctgaagctgaagaa
atcgctgtgataagtattcagctcgctgctagattcctgttcactacaggattccatacc
aaaaaagtagtccgaggccctgctagtgactggtacgatgccttgtgcatcctactacgt
cacagtaagaacgtccgcagctggttagcacataacgtcctgtttgcattccccacacgc
ttttcggaatacctgctggagtgcccaagtgccgaagttcgtggagccttctccaagatc
atagtcttcattgcacacttctccctgcaggatggctcttgccctgccccagtcacttca
ccaggctcctctacacaggcctgtgacaatatgactctgagcgatcatctcttgcgggct
gtgcttaacctgctaaggagggaggtatctgaacatgggcgtcatcttcagcagtacttc
aacctttttgttatgtatgccaatctcggtttagcagaaaagacacagctgttgaagttg
agtgtgccagctaccttcatgctggtggctttggatgagggtcctggccctccaattaag
taccagtatgcagagctgagcaagctttatacagtagtgtctcagctgctcagatgttgt
gacgtatcatcgcgtatgcagtcctcaattaacggtaatgcgcctttaccaaacccatat
ggtgattccaatcttacagctccgatcatgcctatacagcagcttgtggcagagatattg
tttgtgcgggccagctatgtgaagaaaatcattgaggactgcagtaactctgaggagact
gttaaactgctgcgattttgctgctgggaaaacccccagttttcctcgactgtgctcagc
gagcttctctggcaggtggcatactcctatacttatgagctgaggccttatctggacttg
ctactccagatcctgttgattgaagactcatggcagacacacagaatccacaatgtgcta
aaagggatccctgacgaccgggatgggttgtttgataccatccagcgttccaagaatcac
taccagaaaagagcatatcagtgcattaagtgcatggtaggtctcttcagcaattgctct
gtggcctaccagatcctacagagtaatggcgacctgaaaaggaaatggacgtgggcagtg
gagtggttgggcgatgagctggaaaggaggccatacacaggaaacccgcaatacagttac
aacaactggtctcctccagtgcagagtaatgaaacctcaaacggctactttctggaacga
tcacacagtgccagaatgacactggccaaagcatgcgaactttgtcctgaggaggagcct
gatgatcaggaagctcctgatgaccatgaatcctcacctccagaggatacagcactctac
cctcactcacctggaacccagtatcagcagccaaacaaccacacccatggacagccatac
accggtccggctgcccagcacatgaacaaccctcagcgtgcaccccagaggcctcaggac
agttgggagggcacggaggaggtggtccctgagcagtcaaaagagtag
DBGET
integrated database retrieval system
