Silurus meridionalis (southern catfish): 124386227
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Entry
124386227 CDS
T08004
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124386227 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124386227 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124386227 (si:dkey-219c3.2)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124386227 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
124386227 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124386227 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
DUF406
Motif
Other DBs
NCBI-GeneID:
124386227
NCBI-ProteinID:
XP_046705888
LinkDB
All DBs
Position
5:complement(22471286..22517806)
Genome browser
AA seq
984 aa
AA seq
DB search
MAGVPDPLEDMLYSEVDEKAVSDLVGSLESELGGQNKSQSEARRSGAAESGNSNLGKAQA
AQAGTALEARESGAHRVEVKRENGSERTPSTNSVSVPSTLSSAAIMATNRVQPNITVVPK
PAVPGLATSPNCSSDAAVVASSSSPSSSSSAAVTDSLPNTNHIASTIRPVSSRAVAGENG
SSGSVALPSAPTPVAGLQLGVNGAVISSGLGTDTTNTSTSKGTNGTFLATSVQPNHILSQ
PASVSGTQTVALHRPSNITPNPSDPKLAASVSIAPDPASALTFSNASLIKTNPQTQIKTI
VPNQLAGSPVAVRPPMTGTLVHSGAVSTPLTVVSSPSVLVKPDAGQAVGMLRPGTASPVV
STVSVRPGVPAAPAPRAVVPQITVRPQQPTTIQLPPGFTIPPGMVLVRTEAGQLVLVPQQ
VLAQAKAQNQTKAALSPTPATTTTTIRVTTPVQQAPVTSQAIRPIPPTQAKVVQAASTAG
PALQKTPLVTASPAQKPSGPTVITAGARVQTPNQTILKPSPAVTAPAAPTTGLAGLSQEM
QENVKKCKNFLATLIKLASHNSPFPETSKNVKALVQDLLDDKIEPEEFTNRLQTELKSSP
QPYLIPFLKKSLPALRMTLLSSQQSLTQLAQTSSPLTVSAIKAPPPRSLATAMPTVRPTV
TQDQAAVVAVKRTAAQTGPVRMPVVITQSVRPQGAVLRGPAVQVRGPMGIAMQATANQRQ
KVNDPGGGTFRDDDDINDVASMAGVNLNEENARILATGSELVGTQIRSCKDETFLPANLL
HKRILEIARGFGVNEVFADVVSLVSNATEARLRATLENVSALARHRTDPCKDEEHHEQTS
DVRTQLKFFEQLEKMEKQRKDDEEREILLKVAKSRSRQEDPEQARLKQKAKEMQQQELAQ
MRQRDANLTALAAIGPRKKRKLDSPGAPGAEASGSSSGSAGASSSSTRQVRQRITRVNLR
DLIFCLEQERSTARSLLLYKALLK
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgtccccgatccgctggaagatatgctgtattccgaagtggacgagaaagcc
gtcagcgatcttgtgggttcgttagagtcggagctcggcggtcagaataagtcccagagc
gaggcgaggaggtccggagcagccgagagcggaaacagcaacttagggaaagcgcaagcc
gctcaagcgggaaccgcattggaggcgcgagagtcgggagcgcacagagtggaggtgaag
cgggagaacggctccgagaggacacccagcaccaactccgtctccgtcccttccactctg
agctccgcggcgattatggctaccaaccgagtgcagccaaacatcaccgtagtaccaaag
ccagctgtgccgggactcgcaacttctcccaactgttcaagtgacgcagcagttgtagca
tcatcctcatcaccctcatcatcctcatcagcagcagttacagattctctacccaacacc
aatcacatagcttcaactatccgccccgtttcctccagagcagtggcaggtgagaatggc
agcagtggctctgtagctctcccctcagctcccactcctgtagccggattacagctcggt
gtcaatggtgctgtcattagctctggcttaggcaccgacaccaccaacacatccacttcc
aaaggcacaaacggtactttccttgctacttctgttcagcctaatcacatcctctcccag
cctgcgagtgtatcaggtacccagactgttgccctccaccgaccttccaacatcacaccc
aatcctagtgacccgaaactcgcagcgtctgtgagcatcgcccctgacccagcctctgcg
ctgaccttttctaatgccagtctgatcaagaccaacccccagacccagattaaaaccatt
gtcccgaatcagcttgccgggtctcctgtagccgtgcgacctccgatgaccggcacacta
gtgcactcgggggcggtgagtaccccacttacagtggtcagctcgccgtcagtgctggtc
aagccggacgcagggcaggccgtgggaatgctgagaccaggtacggcgtctccggtggtg
agcactgtgtctgtgcgacccggggttcctgcagcacctgcgcccagggcagtggtacct
caaatcacagtcagacctcaacaaccgaccacaatacagttaccacccggattcactatt
ccaccgggaatggtgcttgtccggaccgaggcaggccagctggtgctggttcctcagcag
gtcctggcccaggcgaaggctcaaaatcagaccaaagcggctctgtctcctacgcctgcg
acgaccaccaccactatccgagtcaccactcctgtgcagcaagcacctgtgacatcccaa
gccatccgaccgattcctcctacacaggctaaagtggtccaggctgccagcactgctggt
cctgctctacagaagaccccattggtgacagcaagccctgctcagaagcccagtggcccc
actgtgatcactgccggagctcgtgtccaaacaccaaaccagacgatcctgaaaccttca
cccgccgtcacggcacccgccgcccccaccacgggactcgccggcctttctcaggaaatg
caagagaatgtgaagaagtgcaagaatttcttagcaacgttgatcaaactggcatcccat
aattccccttttccggaaacgtcgaagaacgtgaaggcacttgtgcaggacctgctggat
gacaaaattgagcctgaggaatttacgaatcgcctgcagacggagctgaagtcgtctcct
cagccctacctcatcccctttctgaagaaaagcctacctgctctccgcatgacgctgttg
agctcacagcagtctctgacccagctcgctcaaacctccagccccctgactgtgagcgcc
attaaggctccgcccccacgctctctcgccaccgcaatgcctactgtccgccccaccgtc
acacaggaccaagctgccgtggtggctgtgaagaggacagcagcacagacgggtccagtt
cggatgcccgtagtgatcactcagtcagtccggcctcaaggagctgtattgagagggcca
gcggtacaggtgaggggcccaatgggcatcgccatgcaggctacagccaatcagagacag
aaggtgaacgacccaggaggtggaacttttagggatgatgatgacatcaacgacgtggcc
tccatggccggcgtgaaccttaatgaggagaacgcacgtattttagccacgggctcggag
ctggtgggcacacagatccgctcctgcaaagacgaaacgttcctgccggctaatctgctc
cacaagcgcatcctcgagatcgcacgtgggtttggtgtgaacgaggtgtttgcagacgtg
gtgagtttggtgtccaacgccactgaggccaggctccgcgccacgctggaaaacgtctct
gcgctcgcgcgacaccgaaccgacccctgcaaggatgaagagcaccacgagcagacgtca
gatgtgaggacgcagctgaagttcttcgagcagctggagaagatggagaagcagcgcaaa
gacgacgaggagcgagagatccttctgaaagtggccaaaagtcgctccaggcaagaagat
cccgagcaagctcggctgaagcagaaagctaaagagatgcagcagcaggaactggcacag
atgagacagcgcgacgctaacctcaccgcactcgcagcgatcgggccacgcaaaaaacgc
aaactggactctcccggggctcctggagcagaggcatcaggaagctcctcgggctcggcc
ggcgcctcctcgtcctccactcggcaggtgagacagcgcatcacgcgggtcaacctcagg
gacctgatcttctgcctggagcaggagcgctccacggcccgctcgctgctgctctacaag
gctctgctcaagtag
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integrated database retrieval system
