Silurus meridionalis (southern catfish): 124386356
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Entry
124386356 CDS
T08004
Symbol
rlim
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM isoform X1
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124386356 (rlim)
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124386356 (rlim)
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124386356 (rlim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
124386356
NCBI-ProteinID:
XP_046706104
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Position
5:complement(7806658..7813293)
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AA seq
639 aa
AA seq
DB search
MEGSDNSDQGSNEQADSQRRQQQDRLNREEAFYQFVNNLSEEDYRMMRDNNLFGTPGEIT
EEELLNRLHQIRDGSEQQQPHSSSSSTNSPEVSRGEPRVSETEGTEDASNGDTLLDWLNT
VRQTGNTTRSGHRGNQSWRAVSRTNPSSGDFRFSLEININRNLAEQQTQTEADRLDTDQS
RAEDSVDEPETPMEAAEVVEEPVVEEMAVIVEPELPAPNIPAVTRPASPQNQQPPPSPNP
PQVERPSRGQIRARSPSPEQRRTRARTARSHLAVSLDQLDGLPQSRHGLPARSPDPVPEV
HEDGSSRTRLHVLSRQNIQLESEETIASTEPQPAPQPVQENETPSGEAGASGRRPPTIML
DLQVRRVRPGEYRERDSIANRTRSRSQTSNNTFLYETERGGFRRTFSRSERAGVRTYVST
IRIPIRRISDAGLGEATSMALQSMIRQIMTGFGELSYFMDSDSDSTDSSRGSNPAADLAD
ALGNPDAGSPSTVTEPSPGAGGSNQSGLEAQTEEREETGAGLRESRARQRAPISLEESGS
LPFLRLAHFFLLNDEDDDQPRGLTKEQIDNLSMRNFGENDALKTCSVCITEYAEGNKLRK
LPCSHEYHVHCIDRWLSENSTCPICRRAVLVTANRESVV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggagggttcagacaattcagatcaaggcagtaacgaacaggccgattcgcaacgcagg
caacagcaggatcgcctcaaccgagaagaggctttctaccagtttgttaataatctgagt
gaggaggactacaggatgatgagagacaacaatctttttggcacaccaggtgaaattaca
gaggaagagttgttgaaccgccttcatcaaattagggatggttctgaacagcagcagcca
catagtagtagcagcagtaccaacagtcctgaagtcagtaggggagagcccagagtttca
gagactgagggtaccgaagatgcatctaatggcgacacacttcttgactggctcaacact
gtgcgtcaaactggaaacaccacaagaagcgggcaccggggaaaccagtcgtggcgggca
gtaagccgaaccaatccaagcagtggagacttccgcttcagcttggagattaacatcaat
cgcaacctagccgagcagcagacacagactgaagctgatcggctagacacagaccaaagc
cgtgctgaagactctgtagatgaacctgagacacccatggaggcggcagaggtggttgaa
gagcctgtggtagaagagatggctgttatagttgaacccgagcttcctgcacctaatatc
ccagctgtaactcggccggcaagcccacagaatcagcaacccccaccttctccaaatcct
cctcaagtagagcgcccaagtagaggccagattagagctcgtagcccaagcccagaacag
cgcagaaccagggcgcgaacagcaaggagtcatttagctgtcagcctggaccagttagat
gggcttccgcagtctcgccatggactacccgctcgaagtccagatcctgtcccagaagtt
catgaagatggcagctccaggacacgactacatgttctttctcgacagaatatacagtta
gaaagcgaggaaactatagcatctacagagccccaaccagcacctcagcccgttcaggaa
aacgaaaccccttcaggtgaagcaggtgcttctggacgacgtcccccaacaataatgctg
gacttgcaggttcgtcgggtgagaccaggtgagtacagagagagagacagcattgctaac
cgtacccgctcacgatcacagacctccaacaacacattcttgtatgaaacagagcgtgga
ggctttcgaaggaccttttcacggtcggagcgggctggtgtgaggacgtatgtcagcact
atccgtattcccatcaggaggatctcagatgccgggcttggtgaagccacatccatggct
ctgcagtccatgatccggcagataatgactggttttggtgaactcagctactttatggac
tctgattcagactccacagactcaagccgtggctccaatcctgcggcagatctcgctgat
gctctgggaaatccagatgctggaagtccatctactgtaactgagccatcacctggggca
ggaggctcaaatcagagtggtttagaagcacagactgaagaaagggaggaaactggtgcg
ggtctaagagagagcagggcaaggcaacgtgctcctatcagcctagaggagtctggttct
ttgccctttttgcgacttgcacatttcttcttgctcaacgatgaagatgatgatcagccc
aggggcctcaccaaagagcaaattgataacctttctatgcgaaattttggtgagaatgat
gcactcaagacctgtagtgtctgcattacagagtatgctgaaggcaacaagcttcgtaaa
cttccctgctcacacgagtaccacgtgcattgtatagaccgttggctttcggagaattca
acttgccccatctgccgcagggcagttcttgttactgccaacagagagagtgttgtctag
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