Silurus meridionalis (southern catfish): 124386451
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Entry
124386451 CDS
T08004
Symbol
nup160
Name
(RefSeq) nuclear pore complex protein Nup160
KO
K14303
nuclear pore complex protein Nup160
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124386451 (nup160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124386451 (nup160)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124386451 (nup160)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124386451 (nup160)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124386451 (nup160)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_NUP160_120_M
Beta-prop_Nup120_160
TPR_Nup160_C
NUP160_helical
HEAT_Nup120
TPR_2
TPR_1
CvfB_1st
Motif
Other DBs
NCBI-GeneID:
124386451
NCBI-ProteinID:
XP_046706258
LinkDB
All DBs
Position
5:complement(28346386..28360806)
Genome browser
AA seq
1408 aa
AA seq
DB search
MRHIRCSDARKMAAALERSFIEICGFERETVSRFRDLSINLGVSAPPGGGRFADSAGAFS
YEESGKLLSLTSNRFIHWSTSGDIVQLVEQSLDVNLLNNSLRLKILNCSVLPGGVHIHET
LNNVVVLIVTNQSVHRMVLPHPTRMYRSELVAELQMQSVFTDVGKVCVQEAIHSFTLPLT
QNPITSSTWLSMHGHAHFALATPAGGITIVTLPPHDQQGSLSVIELKQSSVMQRLAGWVP
TAIRGDQSPCDLAVSLAVWPMEDDTFIFALCQDHKLRVWSYKEQQCVLVADVLDYVPAGR
AELKNSLGVSHRLRVCVSGSAGVCVCVYIASPNSGQFCVLQLGSSNSTRYSLELISTIYS
TQETLVDFVLTSTDIWALWLDDDNQTVVKYINFEHNAAGMWNQVFVQPAPEEEVNIGPEQ
DPRETYLDVLFSPLRFTAAAIVKALQIYKRGTERFLDLTWETLKKEVTLAVENELQSSVT
EFEFSQEDYRMLQVEFWSKFYACCLQYQEALSTPLALHVDPATAMVCLLKKGLVSFLLPC
FAVDHLYLCSDEYLFSEEETPVADEPELGGDVLQLVQCLRLVSECLQGDMVCVMDRAVEM
LMSPERAAEQVLDNLLTNDTDNLVADITNKLQDVRNPLAAMNALLRELDLEAELDTPDTG
LSRTGRSLSVRLSLSQLYSSSMAVSVVCQAMCHMTMTRALICRDLLILQHLYLHLGDKGL
LQSSSQCLQLQQDLIPRCSHLLCSYHLLKQLSQTLASPVPLDTLDANLQHLSVLKLSDST
AVSANRSVLNPQTVVELFYQNVAHKVIVLQLFGQREVPESHMSSLHWNQLISSVVHLLTQ
LLWPSNPNFLFPECMMGNCQYTQLQEYVRLIGPWCQANVGSCRFVLGQAYLACGEGQKAL
QCFQEAAPEVEKEEFLMRLTGTEEDEAGTTAPRLLYYNKVLRLLEDVGLPDLVVQLATLA
VSEAVNDQRSQAALWTRIFKHHLDLGHNREAYEALTQNPDPSRQLDCLRQLVVVLCERAQ
LHDLIQFPYINLHEEVVGIIESRARAVDLMTHNYYELLYAFHINRHNYRKAGTVMFEYGM
RLGREVRTLKGLQKQVNCYLSALNCLRLIRPEYAWIILPSSGSACERPGASPKRSHDGDL
APPPASRQIEILELKDLEKEYVLARCRLTLAQQEPSSASIAGSASAVEMVSLLVQAGLFD
TALSLCETFKLDLTPVFEGLTFKCIKLQYGSDQSHNEAWNWLSANQLPNLITTKESSATD
EAWRLLASYLEKHQSQNAQHHRCVINRLLSHGVPAPDWLLNAYKEVDAASMLRLYLNYDL
LDSAAELVMEYVDALLGKGHQYFGIEMPLSATAPLVWLPYTSIDQLLHNLRESQTPSNTQ
VYEKLRTKLAEYHTQVERSSKHRLQVPA
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcacatccggtgttcagacgcgcggaaaatggcggctgccttggagaggagcttt
atagagatctgcgggtttgagagggaaacagtgtcccggtttcgcgacctcagcattaat
ctgggtgtcagtgcgccccctggtggtgggaggtttgcagacagcgcaggggctttctct
tatgaggagagcggaaaacttctgtctctcaccagcaaccgattcatccactggtccacg
tcaggagacattgttcagctggtggaacagtctctggatgtaaacctgttaaacaactct
ctccgtctgaagatcctgaactgcagcgtgcttcctggaggcgttcacatccatgagacc
ctgaacaatgtcgttgtcctcatagtcaccaaccaatcagtgcacaggatggtgctgccc
catcctacacgcatgtaccgcagcgagctggtggctgagttgcagatgcagagtgtgttc
acggatgtggggaaggtgtgtgttcaggaagccattcactccttcaccctgccgttgact
cagaaccccatcacgtcttccacctggctcagcatgcatggccacgcccattttgctttg
gccactcctgctgggggcatcaccatagttacgttacccccccatgatcagcagggttcg
ctatcagtgattgagttaaagcagagttcagtgatgcagaggttagccggctgggtcccc
actgccatcagaggtgaccagagcccatgtgacctagcggtgagtttagctgtgtggccg
atggaggatgacaccttcatcttcgctctgtgtcaggatcataaactgcgcgtctggtct
tataaggagcagcagtgtgtgttggtggcggatgtgttggattacgtccctgcgggtcgg
gctgagctgaagaacagcttgggcgtctctcaccgcctgcgtgtgtgtgtgtcgggttct
gcgggtgtgtgtgtgtgtgtttacatcgcctctccaaacagtggtcagttctgtgtcctg
cagctcggctccagtaacagcacacgctacagcctggagctcatctccaccatctacagc
acacaggagactctggtggactttgttctaacctccactgatatttgggctctgtggttg
gatgatgataatcagactgtggtgaagtacatcaactttgagcataacgccgcaggcatg
tggaaccaggtgtttgtgcagcctgcaccagaagaggaagtgaacattgggcctgagcag
gaccccagagagacctacttggatgttcttttttctcctctgcgctttactgctgctgcc
attgtaaaggctctacagatttacaaacgtggcacagagcgatttcttgacttaacgtgg
gagacactgaagaaagaagtgactctggctgtagagaatgagctccagagtagtgtgaca
gaattcgagttctctcaggaggattatcgaatgctgcaggtggagttctggtccaagttc
tatgcttgctgtctgcagtaccaggaggctctgtccacccccctcgccctgcatgtggac
ccggccaccgctatggtctgcctcctcaagaagggcttggtgtcgtttctgctgccctgc
ttcgctgtggatcacctgtacctgtgctctgatgagtacctgttctccgaggaggaaact
cctgtagctgatgaaccggagctgggtggagatgtcctgcagctggtgcagtgtttgcgt
ttagtgagcgagtgtttgcagggggacatggtgtgtgtgatggacagagcggtggagatg
ttgatgtctccagagagagcagcagaacaagtgctggacaacctgcttactaatgacact
gataatttagttgctgatatcaccaacaagctgcaggatgtgcgtaatcctttggcagca
atgaacgctctgctccgagagctcgacctggaggcggagttagacacacctgacacaggg
ctgtcacgcacaggccgctctctgagcgtacgtctcagtctgtctcagctgtacagcagc
agcatggctgtgagtgttgtgtgtcaggcaatgtgtcacatgaccatgactcgagcgctg
atctgcagggacctgctcatcctgcagcacctgtacctgcacctcggagacaaggggctc
ctgcaaagcagctctcagtgtctgcagctgcagcaggatttgatcccacgctgttcacac
ctgctctgctcatatcacctgctcaagcagctcagtcagaccctcgcttcacctgtacca
ctcgacacactagacgctaacctgcagcacctgtccgtgttgaagttgtctgattccaca
gccgttagcgcaaacagatcagtgttgaatcctcagacggttgtggaactgttctatcag
aatgtagctcataaggtcattgtactccagctgtttggccagagggaggtgccagagagt
cacatgagcagcctgcactggaaccagctcatctccagtgtagtgcatcttctgactcag
ttactgtggcccagtaaccccaacttcctcttcccagagtgcatgatgggaaactgccaa
tacacacaactccaggagtacgtacgtctgattggcccgtggtgccaggctaacgtaggg
tcgtgtcggtttgtcctgggtcaagcgtacctggcctgtggagaaggacagaaggcgctg
cagtgtttccaggaggcagcaccggaggtggagaaggaggagtttctgatgagattgaca
ggaacggaggaggacgaggcaggaactacagcacctcgattactctactacaacaaggtt
ttaagactcttggaggacgtcgggttgccagatcttgtggttcagttagccacgctggcc
gtatccgaggctgtgaatgatcagcgcagtcaggccgcgctgtggacacgtatttttaaa
caccatctggatctcggacacaacagggaggcgtatgaagctctgacccaaaaccctgat
cccagcaggcagttagactgtcttcggcagctggtggtggtcctgtgtgaacgcgctcag
ctacacgatctcatccagttcccttacatcaacctacatgaggaggtggtggggattatc
gagtctcgtgcccgtgctgttgacctgatgacccataattattacgaacttctctacgcc
ttccacatcaatcgccataactacaggaaagctggtacagtgatgtttgagtacgggatg
cgtctgggtcgtgaggttcggactctaaagggtctgcagaagcaggtgaactgttacctg
tctgctctgaactgtctgcgtctgattcgtccagaatacgcctggatcatcctgccttca
tccggttctgcttgtgagagaccaggtgcgtcccccaagcgcagccatgatggagatttg
gctccgcccccagcaagtcgtcagattgaaatactggagctgaaggatctggagaaggag
tatgttcttgcacgttgtcgtcttacacttgcgcagcaggaaccatcctcagcctctata
gcaggcagtgcgtcggcggtggagatggtgtccctgttggtgcaggccggactgttcgac
acggcactgtcactgtgcgagacgttcaaacttgatctcacacctgtctttgagggactc
accttcaagtgcatcaagcttcagtacggatctgatcagagccacaacgaggcgtggaac
tggttatcagccaatcagctgcccaatctcatcactactaaagagtccagtgcaacagat
gaagcgtggagacttttggcctcatacctggagaaacatcaatcccagaatgctcagcat
catcgctgcgtcattaacaggctgctgtcacatggtgtgccggctcctgattggctgctt
aacgcgtataaggaagttgatgctgcatccatgttacgtctctacctgaactatgacctg
ttggactcggccgctgagctcgtgatggagtacgtggacgctctactggggaagggacat
cagtattttggaatagagatgcctctgagtgcaacagcaccgctcgtctggttgccctac
acctccatcgaccagctgcttcacaacctgagagagagtcagactccgagcaacacgcag
gtgtacgagaagctgaggacgaagctggcggagtatcacacacaggtggagcgcagcagc
aaacacagactgcaggttccagcctga
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integrated database retrieval system
