Silurus meridionalis (southern catfish): 124386528
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Entry
124386528 CDS
T08004
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124386528 (ssrp1a)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124386528 (ssrp1a)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
124386528 (ssrp1a)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
124386528 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
SSRP1_C
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
124386528
NCBI-ProteinID:
XP_046706384
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All DBs
Position
5:4866534..4879009
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AA seq
701 aa
AA seq
DB search
MGDTLEFNEIYQEAKGFWNDGRLRFSKQSVVYKSSKTGKVDSIPAPDLCLAQWRRVCLGH
GIKLATNNGHVYKYDGFKDTDFEKISAFFKANYKVELAEKDMCVKGWNWGTAKFSGPLLS
FDINDSPAFEIPLANVSQCTTGKNEVTVEFHQNDDAEVSLMEVRFYVPPSTGDDGTDPVE
VFSQNVLSHADVIQATGDAVCIFKELQCLTPRGRYDIRIYPSFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKDEDVNLTLNMSEEEVERRFE
GKLNKHMSGSLYEMVSRVMKALVNRKITVPGNFQGHSGAQCITCSYKATSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGSQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGLKEDVKASGGYSDSDEDEHDAYLERMKEEGKIREEGDESEGDSDESFNPG
EEDDDIAEEYDSNASVSDSEANDDDSEDEGKKKKVEKKPKKPVKEKKERKPRKEKKEKDA
GAPKRPMSAYMLWLNANRERIKSEYPGISVTEISKKAGEMWKQIDKSRKEEWDKKAEEAK
KQYERAMKEYKESGGGASSSVVKDKKKKKGGKVDEKKRKSGGEKERDKVVNESFKSKEFI
SSEESSSDSDHGKSKKRKGDDDEDEEVASTPPSSEEESGSD
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgggagacaccctggagttcaatgagatttatcaggaggcgaaaggattctggaatgat
ggccggttgaggttcagcaaacagtctgtggtctacaagagcagtaagacgggtaaagtc
gacagcatccccgctcctgacctgtgtctcgcacagtggcgtcgcgtctgtctcggccat
ggcatcaaactggccacaaataacggtcacgtctacaaatacgacggctttaaagacacg
gactttgagaaaatctcggcatttttcaaggctaactacaaagtcgagctggccgaaaag
gacatgtgtgtgaaaggctggaactgggggactgccaaattctcagggcctttgctgtca
ttcgacatcaacgacagtccagcgtttgagatccccctagccaatgtctctcagtgcacc
acgggaaagaacgaggtcacggtggagttccatcagaacgacgatgctgaagtgtcgctg
atggaagtccgcttttacgtccccccctccactggagacgacggcacggaccctgtcgag
gttttttcccagaatgttctgtctcatgcagacgttattcaagctactggagatgctgtg
tgtatctttaaagaactgcagtgccttacaccgagaggaaggtacgatattcgtatctat
ccttctttcctacacctgcacggtaagacatttgactacaagatcccctacaccaccgtc
ctgcgccttttcctgctgccgcataaggaccagaggcagatgttctttgttatcagcttg
gatccacccattaagcagggccagacacgctaccatttcctcatcctcctcttctccaaa
gatgaagacgttaacctcactctcaacatgagcgaggaggaggtagagaggcgctttgag
gggaagctgaacaagcacatgtcgggctctctgtacgagatggtcagcagggtcatgaag
gctctggtcaacagaaagatcacagtgcctggaaacttccagggtcattcaggtgcccag
tgcatcacatgctcatacaaggctacctcaggactgctgtatccgcttgagaggggcttt
atttacgttcacaaacccccggtgcacttgcgtttcgaagagatctcctgcgtgaacttc
gcccgaggtaccaccaccacccgctcgttcgacttcgagatcgagaccaagcagggcagc
cagtacaccttcagcagcatcgagagagaagaatacggcaagctgttcgacttcgttaat
gccaagaagctgaacatcaagaacagaggcttaaaggaggacgtaaaggcaagcggtggc
tacagcgactcggacgaggatgagcatgatgcttatttggaaaggatgaaggaagagggt
aaaatcagagaggagggagatgagtctgagggtgacagcgatgagtcctttaatcctggc
gaagaagatgatgatattgctgaagaatacgatagcaatgcctcggtgagtgacagtgag
gccaatgatgatgacagcgaggatgaagggaagaagaaaaaggtagagaagaagcctaag
aaaccagtgaaagaaaagaaggagagaaaaccacgcaaagagaaaaaggagaaggacgca
ggcgcccctaagaggcccatgagcgcctacatgctgtggttgaacgcgaacagggagcgg
atcaagtccgagtatcctggaatctcagtcacggagatctccaagaaagccggagagatg
tggaaacagattgacaaaagtcgcaaagaggagtgggacaagaaggcagaagaagccaaa
aaacaatacgaacgagcaatgaaggagtataaagagagcggaggaggcgcttcatcttct
gtggtcaaggataagaagaagaagaaaggtgggaaagtggacgagaagaaaaggaagagc
ggaggagagaaggagcgagacaaagtagtaaacgagagctttaagagcaaagagttcatt
tccagcgaggagagctcgtccgattccgaccacggcaaaagcaaaaagcgcaagggcgat
gatgacgaggatgaagaagtcgcatctacaccgccgagttcagaagaggagtccggctct
gactaa
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