Silurus meridionalis (southern catfish): 124386555
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Entry
124386555 CDS
T08004
Symbol
nedd1
Name
(RefSeq) protein NEDD1 isoform X1
KO
K16547
protein NEDD1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124386555 (nedd1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
smeo04812
]
124386555 (nedd1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Pericentriolar materials (PCM)
Other PCM proteins
124386555 (nedd1)
Microtubules and associated factors
gamma-tubulin ring complex
124386555 (nedd1)
Cytoskeleton proteins [BR:
smeo04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
124386555 (nedd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
EIF3I
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
WD40_like
NBCH_WD40
eIF2A
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_LRRK2
KNTC1_N
Frtz
SdiA-regulated
Motif
Other DBs
NCBI-GeneID:
124386555
NCBI-ProteinID:
XP_046706416
LinkDB
All DBs
Position
5:21952895..21960629
Genome browser
AA seq
681 aa
AA seq
DB search
MEEVTRLVSSGDCLKIWDSTSMSVVEQFNPHSASHPLAQACWSSSNQYIVSASSIGDKLV
VTSLKSSPVPVMELAEGKKQTRVALNSTSQFLVSGGLDNTVNIWDLKTKRLHRSLKDHKE
EVTCVSFNGGDSYIASGSTSGDIILHSITTNLSSKAFGHGPNEPIRDLKYSLIKRSLLGS
VSDSGSVVLWDANTQKELHTFEGAHKAPASGLAFSPANDLLFITVGLDKKIVCYDTSSKV
IFRSKQVESPLTTVDFTPDGAGLVVGSTQGRIYMYDLRNLSAPVKTTMAHKTSVTCIRFQ
HSNTRLKTSKTVSGKTTTSQSNKRISVKLGQTQQGGPSTPTSSVPTVLEQQPVSRGDGQT
HNLGSGGGPEVPSRDAEGQQSLDKFNSVGRNSLSLDIFSPVTDGFKTHGLIGDTPTSRNG
GSADVFFREPEGQHSSDKFRVGRNSLDIFSPVRDDYKGHRLSDASSVKKDLDFLPQHGSA
QRKNPLGTPGARCYSPLTAVHTPPAIKEEDTVITSPTHTDTQSNMVKKSNYLRQNVLNTL
PASQSTHMQSVPSFNTPEASQRRELSTQLNYDSPVSCSQPVAEPAAAAPAAVAGASGAVS
SEAPLTSVQMNFVRNMIHEALEDFRDTCHRDIINLQVEMVRQFYIQLNEIHGLIERYSIN
DSLVEEIEKLKEENKRLRANY
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtgacgcgtttggtgtcatcaggcgactgcctgaagatctgggattccacc
tccatgagcgtggtggagcagttcaaccctcacagtgccagccatccactagcacaggcc
tgctggagcagcagcaatcagtacattgtcagtgccagcagtataggagacaagctggta
gtgaccagcctgaagtcctcaccagtgccagtgatggagcttgcagaagggaaaaaacag
acacgagttgcactaaattcaacatcacagttcttggtcagtgggggactagataacacg
gtcaacatctgggacctgaaaacaaagagattacatcgcagcctcaaggatcataaggag
gaagtaacgtgtgtatccttcaatggtggtgatagttacatagcatctggctccaccagt
ggagacatcattctccacagcattactaccaatctgtccagcaaagcctttggccacggg
cccaatgagcctatccgtgacttgaagtactcattgataaagcggtctctcttggggagt
gtgtcagacagcggctctgtggttctgtgggatgccaatacacagaaggagctacacacg
tttgaaggagcacacaaagctcctgcctcaggcctggccttttctccagcaaatgacttg
ctctttattacagtgggactggataagaagattgtctgttatgacacttccagcaaagtt
attttccgaagtaagcaggtagagtccccacttacaactgtagacttcactccagatgga
gcagggctggtagtgggctccacccaaggacggatctacatgtatgatctgcgtaaccta
agtgctcctgtcaaaaccaccatggctcacaagacctcagtcacatgtattcgcttccag
cactcgaacacaagactaaaaactagtaaaacagtctcaggcaagactactacttcgcag
tctaacaagcggatctccgtaaagctggggcagacccagcagggcggtccatctactccg
acttcttcagttcctactgtcctagaacagcagccagtaagccgaggagatggacaaact
cacaacctagggagtggaggaggtcctgaggtgccatccagagatgctgaaggccagcag
agtttggataagtttaacagtgtcggtcgaaacagtctgagcctggatattttctcacct
gtaaccgatgggtttaagacacatggcttaattggtgatactccaacttcaagaaatggg
ggcagtgctgatgtctttttcagagaacctgaggggcaacacagttcagacaagtttagg
gtgggtcgcaacagcctggacattttctctcctgtccgagatgattataaaggtcacagg
ctcagtgatgcctcaagtgtaaagaaagatttagatttcttacctcagcacggttcagct
cagcgcaagaacccactgggtacacctggtgctcgctgttatagtcctctgactgctgtc
cacacaccacctgcaatcaaagaggaggatacagtgatcacatcacctacgcatacggac
acacaaagcaatatggtaaagaagagtaattatctgaggcaaaatgttctgaatacactt
cctgcttctcagagtacacacatgcaatcagtgccttcattcaacactcctgaggcaagt
caaaggagagaattgtcaacccagctcaactatgattcgccagtaagttgcagtcaacct
gtagctgaaccagcagcagcagcaccagcagcagtagcaggtgcatcgggtgctgtcagt
agtgaagcaccactcacctctgtccagatgaattttgtgcgcaacatgatccatgaagct
ctggaagatttcagagacacatgccacagagatattatcaatctgcaagttgaaatggtg
cggcagttctatattcagctgaatgaaatccatgggctcattgagcggtactctataaat
gacagtcttgtggaagagattgagaagctgaaggaagaaaacaaacgactcagagcaaat
tactaa
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