Silurus meridionalis (southern catfish): 124386715
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Entry
124386715 CDS
T08004
Symbol
sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
124386715 (sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124386715 (sox17)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124386715 (sox17)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
124386715
NCBI-ProteinID:
XP_046706616
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Position
6:11337824..11341122
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AA seq
395 aa
AA seq
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MSSPDAGYASDDPSQARGTSSAMMAGAAQCAWTEPLSPRAHAKAKGEACAAARGKGEARI
RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALSMLDKRPFVEEAERLRVQH
MQDHPNYKYRPRRRKQVKRIKRLDSGFLMPGASESQGTLSMENIEMIYSHPPGGLPQAGL
SQYCDAQGLFEHYSLPTPDSSPMDSMGTESVFFGGHSQDDGSHMAYSYLHQQEYAPLEHQ
HPHVSTQAQGRVRHDTHSHATTHSQVHTHSTSNLHLVHAHSSTQVNLMSSSHSQELGNAN
GSSHHTISHNINPHHTHSISQALFNRSLSPGSGQAPPPAYLGCPSTVGVFYNSASQPKRL
LEHPSPPKKDTHILTMLLTSTPIHTQRRVDMLLRC
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcctgatgcgggctacgccagcgacgatccgagccaggcccgcgggaccagc
tcagccatgatggccggcgcggctcagtgcgcgtggacggagccgctcagcccgcgagcg
cacgccaaggccaagggcgaagcgtgcgcggcggcgcgcgggaagggcgaagcgcgcatc
cgccggccgatgaacgcgttcatggtgtgggccaaagacgagcgcaagagactggcacag
caaaaccccgacctgcacaacgccgagctcagcaaaatgctcggtaagtcatggaaagcc
ctgtccatgttggataagcgaccgtttgtggaggaggcggaaagactgcgtgttcagcac
atgcaggatcatccaaactacaagtaccggcctcgtcgccgcaaacaggtgaagagaatc
aagcggctggactctggcttcttgatgcctggggcaagtgagtcccagggcactctcagt
atggagaacattgagatgatttactctcacccccctgggggtttgcctcaggctggtttg
tctcagtactgtgatgcccagggcttgtttgaacactacagccttcccactcctgactcc
tccccgatggattcaatggggacggagagtgtgttcttcggtgggcattctcaggatgat
ggctctcacatggcctacagctaccttcaccaacaagagtacgcacctctagagcatcag
cacccccacgttagtacccaggctcaaggcagagtacgacatgacacccactcgcatgcc
acaacacactcgcaggtccacacacactccacctccaacttacatttagtacacgctcac
agcagcacacaagtcaacctgatgagcagctcacactctcaggaactgggtaatgcaaat
ggcagttcacatcacactatcagtcacaatatcaatcctcaccatacacattcaatctct
caggccctttttaacaggagcctatcacctggctccggtcaggctccaccccctgcctac
ctgggctgcccatctactgttggtgttttctacaactctgcttctcagccaaagcgcttg
ctggagcatccatcacctcccaagaaggacacacacattctcacaatgcttctgaccagc
actcccatacacacacagagacgtgtcgacatgctcctgagatgttga
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