Silurus meridionalis (southern catfish): 124386793
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Entry
124386793 CDS
T08004
Symbol
slx1b
Name
(RefSeq) structure-specific endonuclease subunit SLX1
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
124386793 (slx1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124386793 (slx1b)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124386793 (slx1b)
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
T5orf172
zf-HC5HC2H_2
zf-RING-like
FANCL_C
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
124386793
NCBI-ProteinID:
XP_046706717
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All DBs
Position
6:complement(12970885..12974817)
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AA seq
263 aa
AA seq
DB search
MVVEVESFYGVYMLYCTNPKFKGRIYIGFTVNPERRIGQHNAGRHKGGAKKTSGRGPWEM
VLIIHGFPSDIAALRFEWAWQHPHISRRLSHVTRRTRKESSLQFHWRVLSNMLRVAPWNR
LPLTVRWLRQEYHLEFEPQLQPPLHIPLTFGCVRAKKKQQQDDKEQVESRLDRCLLCRAI
VETSDRLSCFHPSCKMACHLTCLAQHFLKSDPSHLLPVEGKCPGCHHSVLWGNLIRHKNG
CYGDLEEITTNSSQSHWADELQI
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atggtggtggaggtggagagtttttatggcgtctacatgctgtactgcaccaaccccaaa
tttaaagggcgtatttacatcggctttaccgtgaaccccgagcggaggatcgggcaacac
aacgccggaagacacaaaggaggagccaagaaaaccagcggaagaggaccgtgggagatg
gtacttatcatccatggctttccatctgatattgctgctctaaggtttgagtgggcgtgg
cagcacccgcacatctctcgccggctctcccacgtgacccggcgaacacggaaagagtcc
agcctgcagtttcactggcgcgtgctctccaacatgctgcgggtggcgccgtggaatcgt
ctacccctcactgtgcgttggctgaggcaagaataccacctggagtttgagccacagctg
cagccgcctctgcacatccctttgacattcggctgtgtgcgggctaagaagaaacaacag
caggatgataaggagcaagtggagagccggctggaccggtgtctactgtgtagagcgatt
gtagagacttcagatcgactgtcctgcttccatccttcctgtaagatggcctgtcatctg
acttgtttggcgcaacacttcttaaagtcagacccaagtcacctacttcctgtagagggc
aagtgtcccggctgccatcactcagtgctgtgggggaatttaattcgacacaaaaatggc
tgctacggagacttggaagagattactacaaattcttctcagagtcattgggctgatgag
ttgcagatatga
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