Silurus meridionalis (southern catfish): 124387095
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Entry
124387095 CDS
T08004
Symbol
smarcd3a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124387095 (smarcd3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smeo03021
]
124387095 (smarcd3a)
03036 Chromosome and associated proteins [BR:
smeo03036
]
124387095 (smarcd3a)
Transcription machinery [BR:
smeo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124387095 (smarcd3a)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124387095 (smarcd3a)
PBAF complex
124387095 (smarcd3a)
GBAF(ncBAF) complex
124387095 (smarcd3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
124387095
NCBI-ProteinID:
XP_046707157
LinkDB
All DBs
Position
6:8651654..8686089
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AA seq
505 aa
AA seq
DB search
MATEDSTGGARKATKSKLFEFLVHGVRPGMTSGARMPHQGAPMGPPGPPYGGTPPIRPGM
PNTTLDPNRKRPTTTPPVQATPVQTRPRKKPLGFQGANDVSARPLDLREVQSEPAIGSNA
KRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLR
LYISNTFNPAKPDSDDSEGSIASWELRVEGKLLDDPGKQKRKFSSFFKSLVIELDKDLYG
PDNHLVEWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIHTQ
TRSCIIQALWQYVKTNKLQDSHEKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPPDP
IVINHVISVDPNDHKKTACYDIDVEVDDPLKTQMNGFLLSTANQQEIASLDNKIHETIES
INQLKIQRDFMLSFSRDPKGYIQDWICSQNRDLKLMMDVVGNPEEERRAEFYNQPWSQEA
VSRYFYCKIQQRRQELEQALAMRTT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccacggaggattctactggcggagctcgaaaagccaccaagagtaaactgttcgag
tttcttgtccacggagtgcgtccaggtatgacctcaggggctcggatgccccaccaaggt
gcccctatgggtccacccggtcccccatatggtggaacacccccgattcggcctgggatg
cccaacaccacactggacccaaaccgcaaacggcccactactacaccaccggtgcaagcc
acgcccgtccagacccggcctagaaagaaaccactgggattccaaggagccaatgatgtt
tctgcaagaccgctggacttgcgagaggtccaatctgagccagcaattggatccaatgcc
aagagaaggaaaatggcagacaagattctccctcagaggattcgtgagctggtgcccgag
tcgcaggcgtacatggaccttttggcttttgagcgcaaactggatcaaactattatgaga
aagcgggtggatattcaagaggcgctcaagagaccgatgaagcaaaagcgcaagctccga
ctgtacatctcgaacacctttaaccccgccaagcctgattcggacgactcagagggcagc
attgcatcctgggagctgagagtagaaggcaagctgctagatgatcctggaaagcaaaaa
aggaagttttcttcattcttcaagagtttggttattgagctggataaggacctgtatggc
cccgataaccacttagtagagtggcatcgcactcccacaacccaggagacggatggcttc
caggtgaagaggcctggagacgtgaatgttcggtgcacactgcttctaatgcttgattac
cagccaccccagtttaagcttgaccctcggcttgcacgtctgctgggcattcacacccag
acccgctcctgcatcatccaagccctgtggcagtatgtcaagacaaacaagctgcaggac
tcccacgaaaaggaatatataaactgtgacaagtatttccagcagatcttcgactgccca
cgtctgaaatttagtgagattcctcagcggctcactaacctgctgctgccccccgaccca
attgtgatcaaccatgtcatcagcgttgaccccaatgaccacaagaaaacagcctgttat
gacatcgatgtcgaggtggatgatcctctaaagacccagatgaatggttttctgctttca
acggcaaatcagcaggaaatagcttcactagacaacaagatccacgagaccattgaatcc
atcaaccagttgaagattcaaagagacttcatgctcagtttttccagagatcccaaaggt
tacatccaggactggatctgttcacaaaaccgagacctcaagctcatgatggatgtggtg
ggaaacccagaggaggaaagaagagcagagttttataaccagccttggtctcaagaagct
gtgagtcgctacttttactgcaagatccaacaacgaagacaagaactcgaacaggccttg
gcgatgcgcaccacttaa
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