Silurus meridionalis (southern catfish): 124387186
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Entry
124387186 CDS
T08004
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04382
Cornified envelope formation
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124387186 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124387186 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124387186 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124387186 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124387186 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124387186 (col4a5)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124387186 (col4a5)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124387186 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124387186
NCBI-ProteinID:
XP_046707315
LinkDB
All DBs
Position
6:19134012..19178563
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AA seq
1688 aa
AA seq
DB search
MNKKFKSLQNLVAVLLFISLSVGVKQSESAACHGCGPGPKCDCSGVKGAKGDRGFPGQTG
HPGVPGFPGPEGPIGPEGEKGDDGFSGPPGPKGIRGPPGLPGFAGTPGLPGLPGLDGPPG
PKGIAGCNGTKGEKGIPGIPGLSGLDGRPGPSGEPGQKGEPGDVKVLETHGTPGGPGSTG
QPGPRGDPGLPGLPGPVGPHGPRGYDGPPGPPGPPGPKGNMGLNFQGPKGEKGEIGLQGP
PGPPGQVDQLIGTTDGVVHRGEKGDRGGPGPTGSPGPAGPPGPYGGPKGDKGEPGEAGKR
GKPGKDGEPGPPGLQGVIGDPGAPGFPGNIGERGEKGERGLPGPPGVVTSPSQNRVGPKG
DPGLPGSPGIKGEPGLTGVQGPPGQPGRPGIGSQGPPGPPGFQGERGQKGDQGSPGASLP
GAPGRTGPPGLQGPPGLPGPPGISNGVENCIPGPAGLPGLNGEPGFPGESGQKGEKGDTC
VNCFLSGNLIPGPQGPPGPTGSPGSPGLPGFKGERGTPGNPGLLGPPGQEGPQGLPGLPG
EKGDPGDAVAYDGMKGDKGDTGFPGPPGLPGRDGPPGRNGPSGPPGPKGTPGSLLVKGER
GPPGDSGPQGPPGDRGIPGAPGFGIQGPTGEKGFQGVSGRQGPPGPPGQKGDPGQTVSEK
GAPGPRGRDGDPGLPGNPGNPGEPGTPGFPGLPGQKGEPGHPGIGLQGPPGPKGFPGISG
SPGGPGRPGPPGVDGLPGAPGLRGPKGEPGYGIPGPQGSPGLPGSKGFPGPKGDSGFPGN
PGAPGRPGIDGPPGYKGDSGTPGPPGPPGLQGLPGFGAPGQPGPAGPIGPMGNPGSPGFN
GEKGDPGPPGLDIPGLPGDSGSPGLPGPPGPPGPPGNPGNPGQDGLHGFPGQKGDMGVMG
APGPAGNPGSPGVPGFPGPKGDQGQPGLPGNQGVNGAKGNKGEPGLRGPAGISIPGNELK
GVKGEQGPQGPSGPAGTKGIAGLQGDPGQPGQDGRPGPPGPPGHKGDPGIPGIPGPSGSS
GQKGSMGEMGFPGPTGVKGSPGQAGHPGQPGSPGAPGFPGPKGDPGTPGFGQPGTPGPKG
EPGSPGAPGITGPKGQQGLPGSPGSPGNPGPKGDPGLPGFKGAHGAPGPKGLDGVPGAPG
LAGAPGGQGPSGSPGFPGVPGDKGQAGRDGIPGKAGLKGEPGIPGYGLPGPPGIPGMPGP
KGDPGPSGQPGSPGYPGPKGDIGSPGLTGNPGRQGPPGPIGQSIQGPKGIQGPPGPPGRG
GSEGSPGPPGPEGPRGLPGSGGVKGEKGYPGNPGSNGLPGQKGDAGLQGLMGPPGPPGIV
GPKGDIGLPGVTGLPGHKGQTGNSGGPGQRGDPGDPGSPGPPGEPGQAPSPIVVKGAQGP
PGPPGPPGSRGLPGEAGQNGLPGPSGSPGDPGLEGPPGFIGPPGRKGDLGPSGQPGQRGL
PGPPGPEGLPGLQGPVGLSAVAHGFLVTRHSQTTDVPTCPLGTNLIYEGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIQGESI
KPFISRCAVCEAPAMVIAVHSQTIQLPSCPRNWDPLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSSPFIECHGRGTCNYYGNSYSFWLATIEQSEMFRKPQSETLKAGNLQTRVSR
CIVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagttcaagagtttgcagaacctggtcgcggtgctactcttcatatctctg
tccgtaggggttaagcagtccgagtcggcggcatgtcatggttgtgggcctggaccaaag
tgtgactgcagtggagtgaaaggagccaagggtgatagaggtttcccaggtcagacagga
catccgggtgttccaggattccccggaccagaagggccaattggacccgaaggggagaag
ggtgatgatggattttcaggaccacctggacctaaaggaataagaggacctccaggactt
cctggatttgcagggacaccaggacttccaggtcttccaggactggatgggcctccaggt
ccaaaaggaattgcaggctgtaacggaacaaagggtgaaaaaggaataccaggaattcca
ggtttatcaggtctagatggtcgtccgggaccatctggtgagccaggacagaagggagaa
cctggtgatgtcaaagttttagaaacccatggaacaccaggtggtccaggaagcactggt
cagccaggccccagaggagatccaggactgcccgggttgccaggacctgttggtcctcat
ggtcccagaggttatgatgggccaccaggtccgcctggtccaccagggccaaagggaaac
atggggctaaacttccaagggcctaaaggagagaagggtgaaattggcttgcagggacct
cctgggcctccagggcaagtcgatcagttaataggtacaacagacggagtggttcatcga
ggagagaagggtgaccgtggtggacctggaccaactggatctcctggccccgctggacca
cctggtccatatggaggtccaaagggagacaaaggggagcctggagaagctggaaagcgg
ggtaaacctggtaaagatggggagcctggtcctcctggacttcaaggtgtcataggagat
cctggtgcacctggctttccgggaaatattggagaaagaggtgaaaaaggtgagcgtgga
ctacctggacctccaggcgtggtgacatccccatcccaaaaccgagtaggacctaaagga
gatcctgggcttccaggatcccctgggattaaaggagagccaggactgactggtgtccaa
ggaccaccaggtcagccaggccgtccaggaattggaagtcaaggcccaccagggccccct
ggttttcagggagagagaggacagaagggagatcaaggatcacctggagcttctcttcct
ggtgcgcccggtagaactggaccaccaggtttgcaaggacctccgggacttccaggacca
ccaggaatatccaacggtgttgaaaactgcatcccaggtccggctggtcttccaggtctg
aatggtgaacctggtttcccaggagagagtggccagaagggtgaaaagggggacacatgt
gtgaattgtttcttaagtggcaacctcattccaggaccacagggtccacctgggcccaca
ggatccccaggcagtcctgggctccctggttttaaaggagaaagaggaaccccaggcaat
cctggtcttttggggccaccaggccaagaaggaccacaaggtttacctggactacctggt
gagaagggtgacccaggtgatgcagttgcctatgatggtatgaagggagacaagggagac
actggattccctggccctccaggtctgcctggccgggatggaccacctggtcgaaatgga
ccttctgggccgcctggtcccaaaggcacacctggttctctactggttaaaggtgaacgt
gggcctcctggagattctggtccccaaggtcctcctggggacaggggcattcctggtgca
cctggatttggaatacagggacctactggagagaaaggatttcagggtgtttcaggaagg
caaggacctcctggacctccaggtcaaaaaggtgatccaggtcagactgtctctgagaag
ggggcacctggaccaagaggacgtgatggagaccctggtttaccaggaaatccaggtaac
cccggtgaacctggcaccccaggtttcccaggattacctggccaaaaaggagaaccaggt
catcccggtataggcttgcaaggtccaccaggacctaaaggattcccaggtatttcagga
agtcctggtggccctggcaggcctggaccccctggtgtagatggattgccaggtgcacct
ggactccgtggacctaagggtgaacctggttatggtatccctggccctcaggggtcccca
ggattgcctggcagtaagggttttcctggtcctaaaggtgattctggattccctggaaat
ccaggtgcacctggccgacctggtattgatggtccccctggctataaaggtgactctggt
actcctggtcctccgggtccacctggccttcaaggcctccctggttttggtgcacccggc
caacctggaccagcaggccctataggacctatgggtaatcctggttctcctggttttaat
ggtgagaaaggagaccctggtccccctggactagatattccaggtttacctggtgactcg
ggtagccctggattgcctggaccacctggtcctcctggccctcctgggaacccgggtaac
cctggccaagatggactgcatggattccctgggcaaaagggagacatgggagtaatgggt
gctccaggacctgctggtaatcctggcagccctggtgttccaggatttcctgggccaaaa
ggtgatcaaggccaaccaggacttccaggaaatcaaggtgtgaacggagcaaaaggaaat
aaaggtgaaccaggtctaagaggcccagctggtatcagcattcctggtaatgaactgaaa
ggagtgaagggagaacaaggacctcaaggacctagtggacctgctggaacaaagggtatt
gctggtcttcaaggagatccaggtcaacccggacaagatggacgtcctggaccacccgga
cccccaggtcacaaaggagatcctggaattccagggataccaggaccttccggtagttca
ggacagaaaggcagcatgggcgagatgggatttcctggccctactggagttaaaggaagc
ccaggacaagctggacatcctggacagcctggatctccaggagcaccaggattcccagga
ccaaaaggagaccctggaacgccaggatttggtcaaccaggaactccaggacccaagggt
gaacctggctctcctggtgcccctggaatcacagggccaaaaggtcaacagggacttcca
ggaagcccagggtcacctgggaatcctggaccaaagggtgatcctggcctcccaggattt
aaaggtgcacatggtgctcctggtcctaagggtctggatggagtcccaggtgcccctggt
ctagcaggagcacctggggggcaaggacctagtggttctcctggttttccaggtgtacct
ggagacaagggtcaagctggtcgtgatggtattccaggaaaggcaggattgaaaggagag
ccaggtataccaggttatgggctcccaggtcctccaggcattcctgggatgccaggtccc
aaaggagaccccggcccttctggccagcctggcagccctggttaccctggaccaaagggt
gacattggaagtcctggtttaacaggcaaccctggtcgtcaaggaccccctggtcctatt
ggtcagtccattcaagggcctaaaggaatccagggtcctcctggaccaccaggaagagga
ggctctgaaggttctccaggtcctcctggcccagaggggccccgtggactaccaggttct
ggaggagtgaagggtgagaaaggctaccctggaaatcctggatcaaatggtttacctgga
caaaagggagatgctggactacagggtttaatgggccctcctggacctcctggaattgtc
ggacctaaaggagacatcggacttccaggtgttacaggattaccaggacataaaggccaa
actggaaattctggtggccctggacagcgtggtgatcctggtgaccctggttctccaggt
cctcctggtgagccaggtcaagcgccaagtccaattgtggtaaagggtgcgcaggggcct
cctggtcctccaggccctccaggatcccgaggcctaccaggagaggcaggacagaatgga
cttccaggtccgtctggtagtcctggcgacccaggtcttgaaggacctccaggatttatt
ggtccacctggaagaaaaggagatctaggaccgtccgggcagccgggtcagcgaggttta
cctggccctcctggtccagaaggacttccaggacttcaaggtcctgtaggtctgtcagca
gtggctcatggcttcctggttacacgacatagtcagactacagatgtacctacatgccca
ttaggaaccaatcttatctacgaaggctattctctgctttacgtgcagggaaatgagagg
gcacacggccaggacctgggtacggctggaagttgcttacgtcgtttcagcacaatgcct
ttcatgttctgtaacatcaacaacgtgtgtaactttgcttcccggaatgactactcctat
tggttgtctactcctgaacccatgcccatgagcatggctcctatccagggagaaagcatt
aaacccttcattagcagatgtgctgtatgtgaagccccagccatggtgatagcagtgcac
agccagaccattcaactgccttcatgtccacggaactgggatccgctgtggattggctat
tccttcatgatgcacactagtgcaggtgcagagggctctggtcaggctctggcttcgcct
ggttcctgtctagaggagtttcgttcatctcccttcattgagtgccatgggcgcggaacc
tgcaactactacggcaactcctatagcttctggcttgccaccatcgaacagtctgaaatg
ttcaggaagccacagtctgagactctgaaagcaggaaatctccagacacgtgtgagccgc
tgcattgtgtgtatgaagaggacgtaa
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integrated database retrieval system
