Silurus meridionalis (southern catfish): 124387312
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Entry
124387312 CDS
T08004
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124387312 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124387312 (copa)
Membrane trafficking [BR:
smeo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
124387312 (copa)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124387312 (copa)
Exosomal proteins of bladder cancer cells
124387312 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
TPR_COPA_B
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
Beta-prop_TEP1_C
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_Gbeta
WD40_RFWD3
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Herpes_BDLF2
Beta-prop_EIPR1
Aa-Ago_N
Motif
Other DBs
NCBI-GeneID:
124387312
NCBI-ProteinID:
XP_046707538
LinkDB
All DBs
Position
6:5428546..5439148
Genome browser
AA seq
1015 aa
AA seq
DB search
MPLIVSGADDRQVKIWRMNESKAWELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW
DMSKRTGVQTFRRDHDRFWVLGAHPNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYV
KDRFLRQLDFNSSKDTAVMQLRGGSKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSI
PRETDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEI
FYAGTGSLLLRDADGVTLFDVQQKRSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNR
KLESLCNIHENIRVKSGAWDESGVFIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGN
SVYCLDRECRPRVLNIDPTEYRFKLALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPE
VALHFVKDEKTRFSLALECGNIEVALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQR
TKNFDKLTFLYLITGNLAKLRKMMKIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKS
LAYLTAATHGMDEEAEALKETFDLEKEMIPEVDPNAELLQPPPPINPLDTNWPLLTVSKG
FFEGAIAAKGRAGQMAADLDMEAPGGEGWGEDAELHLDDDGFMDAQEGLGEDGALGKEEG
GGWEVEEDLDLPPELDVPAGAGGGAEGEGFFVPPTKGISPTQMWCNNSQLAVDHVLAGSF
ETAMRLLHDQVGVVCFEPLKPLFLQAFLRGRVSYVGLPSLPCLFSYPLRDGGTAEGRRQR
DGQKGGVPAVGLHLRDLISRLQQCYQLTTAGRFDEAVDKFRSILLSVPLLVLDNKQEIAE
AQQLITICKEYIVGLTMETERKKLPKETLEQQKRQCEMAAYFTHCNLQPVHMVLVLRTAL
NLFFKLKNFKTAAGFARRLLELGPKPEVAQQTRKILAACEKNLTDAHQLNYDPHNPFDLC
AASFTPLYRGRPVEKCPLSGACYCPTYKGQVCRVTQVTEIGKDVIGLRVSPLQFR
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgattgtgagcggagcagacgaccgtcaggtgaagatctggaggatgaatgag
tcgaaggcgtgggagctggacacctgcagggggcactacaacaacgtgtcctgtgccgtc
ttccacccgcgccaggagctcatactgtccaactctgaggacaaaagcatccgagtgtgg
gacatgtccaagaggaccggcgtccagaccttccgcagggaccacgaccgcttctgggtg
ctcggagctcatcccaacctcaacctgttcgctgcgggtcatgacagtgggatgttggtg
tttaaactggagcgtgagcgtcctgcctacgccgtctatgggaacatgctgtactacgtc
aaggaccgattcctgcgtcagctcgacttcaacagcagcaaagacacggccgtcatgcag
ctgcgcggaggctccaagttccccgtcttcagcatgtcctacaatcctgcagagaacgcc
gtgctgctgtgtacgagagccactaatctggagaacagcacatatgacctttactccatc
cctcgagagaccgactctcagaaccctgatgctccggagggaaagcgctcctcaggactc
acagcagtgtgggtggcccggaatcgctttgctgtgttggaccgcatgcactctctcttg
attaagaacctgaagaacgagattgtgaagaaggtgcaggtgccgagctgtgaggagatc
ttctacgctgggacgggttccctgctgctgagggacgcagacggagtcacgctgttcgac
gtgcagcagaaacgttcactcgctaccgtcaaaatcgccaaagtcaaatacgtggtgtgg
agtgcagacaccagccatgtcgccctgctggccaaacacgccattatgatctgcaacagg
aagctggagagtctgtgtaacatccatgagaacatacgtgtgaagagcggcgcatgggac
gagagcggagtgtttatttacaccacctccaaccacatcaaatacgccctcacctcaggt
gatcatggtataatccgtaccttggacctgcccatctacgtgacgcgtgtgaggggaaac
agtgtgtactgtctggatcgggagtgcagacctcgcgtcctcaacatcgacccgaccgag
taccgcttcaaactcgcactcgtcaaccgcaagtatgacgaggtgctgcacatggtgcgt
aacgcgaagctggtggggcagtccatcatcgcatacctgcagaagaagggctacccagag
gtggcgctgcacttcgttaaggacgagaaaactcgcttcagtctggctctggagtgcgga
aacatcgaggtggcgctagaggcggcaaaggctctggacgagcgcagctgctgggagcgt
ctgggcgaggcggccctgctgcaggggcatcaccaggtcgtggagatgtgctaccagagg
accaagaactttgacaagctcacattcctttacctgatcacaggaaacctggccaagctc
cgcaagatgatgaagatcgctgagatcaggaaggacatgagtggacattatcagggtgct
ctgtatctgggggacgtcagtgagagggtgcgcatccttaagaactgtggacagaaatcg
ctggcgtatctgactgcggcaacacacggcatggacgaggaggctgaggccctcaaagag
acctttgacctggagaaggaaatgatcccagaggtagacccgaatgctgagctcctgcag
cctcctcctcccatcaaccccctggacaccaactggcccctgctgaccgtctctaagggc
ttcttcgagggagcgatcgctgctaaaggaagagcaggtcagatggcagccgatctggac
atggaagctcctggaggagaaggatggggtgaagatgcagagctccacctggatgatgat
gggttcatggatgctcaggagggtctcggagaagatggagctctggggaaggaggaagga
ggaggatgggaggttgaggaggatctggaccttccacctgaactggatgtgccggctggt
gctgggggaggagccgaaggagaaggtttctttgtcccgcccactaaaggtataagccct
acccagatgtggtgtaacaactcgcagcttgcagtggaccacgtcctcgccggatccttc
gagaccgccatgaggctgctgcatgatcaggtgggcgtggtctgcttcgagccgttgaaa
cccctcttcctgcaagcgtttttacgaggacgcgtttcctacgtgggtcttccgtctctg
ccctgtctattctcctaccctctgagggacgggggcacggccgagggcaggaggcagaga
gacgggcagaagggcggagtcccggcggtggggctgcacctgcgtgacctcatctcccgc
ctgcagcagtgctaccagctgaccaccgcggggcgcttcgatgaggctgtcgacaagttc
aggagcatcctgctgtccgtccctctgctggtgctcgataacaaacaggagatcgctgag
gcccagcagttgatcactatctgtaaagagtacattgtgggtctcaccatggagacggag
agaaagaagcttcctaaagagacactggagcagcagaagaggcagtgtgagatggcagcg
tatttcacacactgtaacctgcagccggtccacatggtgttggtgttacgcactgcgctc
aatctcttctttaaactgaagaactttaagacggctgcaggattcgctcgccgcctgctc
gaactcggacccaaacccgaggtggcgcagcagacgcgtaagatcctggcagcgtgtgag
aagaacctgaccgacgcccaccagctcaactacgacccccacaaccccttcgacctgtgt
gctgcctcctttacccccctgtaccgaggacgtcccgtagagaaatgccctctgtcaggg
gcctgctactgccccacctacaaagggcaagtgtgcagggtcacgcaggtcactgagatt
ggtaaagacgtaatcgggctgcgcgtgagtcccctgcagttccgctga
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