Silurus meridionalis (southern catfish): 124387312
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Entry
124387312 CDS
T08004
Symbol
copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124387312 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124387312 (copa)
Membrane trafficking [BR:
smeo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
124387312 (copa)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124387312 (copa)
Exosomal proteins of bladder cancer cells
124387312 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
TPR_COPA_B
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
Beta-prop_TEP1_C
WDR55
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
WD40_Gbeta
WD40_RFWD3
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Herpes_BDLF2
Beta-prop_EIPR1
Aa-Ago_N
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
124387312
NCBI-ProteinID:
XP_046707538
LinkDB
All DBs
Position
6:5428546..5439148
Genome browser
AA seq
1015 aa
AA seq
DB search
MPLIVSGADDRQVKIWRMNESKAWELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVW
DMSKRTGVQTFRRDHDRFWVLGAHPNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYV
KDRFLRQLDFNSSKDTAVMQLRGGSKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSI
PRETDSQNPDAPEGKRSSGLTAVWVARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEI
FYAGTGSLLLRDADGVTLFDVQQKRSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNR
KLESLCNIHENIRVKSGAWDESGVFIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGN
SVYCLDRECRPRVLNIDPTEYRFKLALVNRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPE
VALHFVKDEKTRFSLALECGNIEVALEAAKALDERSCWERLGEAALLQGHHQVVEMCYQR
TKNFDKLTFLYLITGNLAKLRKMMKIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKS
LAYLTAATHGMDEEAEALKETFDLEKEMIPEVDPNAELLQPPPPINPLDTNWPLLTVSKG
FFEGAIAAKGRAGQMAADLDMEAPGGEGWGEDAELHLDDDGFMDAQEGLGEDGALGKEEG
GGWEVEEDLDLPPELDVPAGAGGGAEGEGFFVPPTKGISPTQMWCNNSQLAVDHVLAGSF
ETAMRLLHDQVGVVCFEPLKPLFLQAFLRGRVSYVGLPSLPCLFSYPLRDGGTAEGRRQR
DGQKGGVPAVGLHLRDLISRLQQCYQLTTAGRFDEAVDKFRSILLSVPLLVLDNKQEIAE
AQQLITICKEYIVGLTMETERKKLPKETLEQQKRQCEMAAYFTHCNLQPVHMVLVLRTAL
NLFFKLKNFKTAAGFARRLLELGPKPEVAQQTRKILAACEKNLTDAHQLNYDPHNPFDLC
AASFTPLYRGRPVEKCPLSGACYCPTYKGQVCRVTQVTEIGKDVIGLRVSPLQFR
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgattgtgagcggagcagacgaccgtcaggtgaagatctggaggatgaatgag
tcgaaggcgtgggagctggacacctgcagggggcactacaacaacgtgtcctgtgccgtc
ttccacccgcgccaggagctcatactgtccaactctgaggacaaaagcatccgagtgtgg
gacatgtccaagaggaccggcgtccagaccttccgcagggaccacgaccgcttctgggtg
ctcggagctcatcccaacctcaacctgttcgctgcgggtcatgacagtgggatgttggtg
tttaaactggagcgtgagcgtcctgcctacgccgtctatgggaacatgctgtactacgtc
aaggaccgattcctgcgtcagctcgacttcaacagcagcaaagacacggccgtcatgcag
ctgcgcggaggctccaagttccccgtcttcagcatgtcctacaatcctgcagagaacgcc
gtgctgctgtgtacgagagccactaatctggagaacagcacatatgacctttactccatc
cctcgagagaccgactctcagaaccctgatgctccggagggaaagcgctcctcaggactc
acagcagtgtgggtggcccggaatcgctttgctgtgttggaccgcatgcactctctcttg
attaagaacctgaagaacgagattgtgaagaaggtgcaggtgccgagctgtgaggagatc
ttctacgctgggacgggttccctgctgctgagggacgcagacggagtcacgctgttcgac
gtgcagcagaaacgttcactcgctaccgtcaaaatcgccaaagtcaaatacgtggtgtgg
agtgcagacaccagccatgtcgccctgctggccaaacacgccattatgatctgcaacagg
aagctggagagtctgtgtaacatccatgagaacatacgtgtgaagagcggcgcatgggac
gagagcggagtgtttatttacaccacctccaaccacatcaaatacgccctcacctcaggt
gatcatggtataatccgtaccttggacctgcccatctacgtgacgcgtgtgaggggaaac
agtgtgtactgtctggatcgggagtgcagacctcgcgtcctcaacatcgacccgaccgag
taccgcttcaaactcgcactcgtcaaccgcaagtatgacgaggtgctgcacatggtgcgt
aacgcgaagctggtggggcagtccatcatcgcatacctgcagaagaagggctacccagag
gtggcgctgcacttcgttaaggacgagaaaactcgcttcagtctggctctggagtgcgga
aacatcgaggtggcgctagaggcggcaaaggctctggacgagcgcagctgctgggagcgt
ctgggcgaggcggccctgctgcaggggcatcaccaggtcgtggagatgtgctaccagagg
accaagaactttgacaagctcacattcctttacctgatcacaggaaacctggccaagctc
cgcaagatgatgaagatcgctgagatcaggaaggacatgagtggacattatcagggtgct
ctgtatctgggggacgtcagtgagagggtgcgcatccttaagaactgtggacagaaatcg
ctggcgtatctgactgcggcaacacacggcatggacgaggaggctgaggccctcaaagag
acctttgacctggagaaggaaatgatcccagaggtagacccgaatgctgagctcctgcag
cctcctcctcccatcaaccccctggacaccaactggcccctgctgaccgtctctaagggc
ttcttcgagggagcgatcgctgctaaaggaagagcaggtcagatggcagccgatctggac
atggaagctcctggaggagaaggatggggtgaagatgcagagctccacctggatgatgat
gggttcatggatgctcaggagggtctcggagaagatggagctctggggaaggaggaagga
ggaggatgggaggttgaggaggatctggaccttccacctgaactggatgtgccggctggt
gctgggggaggagccgaaggagaaggtttctttgtcccgcccactaaaggtataagccct
acccagatgtggtgtaacaactcgcagcttgcagtggaccacgtcctcgccggatccttc
gagaccgccatgaggctgctgcatgatcaggtgggcgtggtctgcttcgagccgttgaaa
cccctcttcctgcaagcgtttttacgaggacgcgtttcctacgtgggtcttccgtctctg
ccctgtctattctcctaccctctgagggacgggggcacggccgagggcaggaggcagaga
gacgggcagaagggcggagtcccggcggtggggctgcacctgcgtgacctcatctcccgc
ctgcagcagtgctaccagctgaccaccgcggggcgcttcgatgaggctgtcgacaagttc
aggagcatcctgctgtccgtccctctgctggtgctcgataacaaacaggagatcgctgag
gcccagcagttgatcactatctgtaaagagtacattgtgggtctcaccatggagacggag
agaaagaagcttcctaaagagacactggagcagcagaagaggcagtgtgagatggcagcg
tatttcacacactgtaacctgcagccggtccacatggtgttggtgttacgcactgcgctc
aatctcttctttaaactgaagaactttaagacggctgcaggattcgctcgccgcctgctc
gaactcggacccaaacccgaggtggcgcagcagacgcgtaagatcctggcagcgtgtgag
aagaacctgaccgacgcccaccagctcaactacgacccccacaaccccttcgacctgtgt
gctgcctcctttacccccctgtaccgaggacgtcccgtagagaaatgccctctgtcaggg
gcctgctactgccccacctacaaagggcaagtgtgcagggtcacgcaggtcactgagatt
ggtaaagacgtaatcgggctgcgcgtgagtcccctgcagttccgctga
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