Silurus meridionalis (southern catfish): 124387409
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Entry
124387409 CDS
T08004
Symbol
dhx15
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124387409 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smeo03041
]
124387409 (dhx15)
03009 Ribosome biogenesis [BR:
smeo03009
]
124387409 (dhx15)
Enzymes [BR:
smeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124387409 (dhx15)
Spliceosome [BR:
smeo03041
]
Complex A
U2 snRNP components
U2 related factors
124387409 (dhx15)
Complex B
124387409 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124387409 (dhx15)
Ribosome biogenesis [BR:
smeo03009
]
Eukaryotic type
90S particles
Helicases
124387409 (dhx15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
AAA_25
Atrophin-1
AAA_29
DUF3915
AAA_30
Apis_Csd
Motif
Other DBs
NCBI-GeneID:
124387409
NCBI-ProteinID:
XP_046707707
LinkDB
All DBs
Position
6:complement(16625905..16652381)
Genome browser
AA seq
770 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRSSDGKDRDRDREERSKDRDRDRDRDRDRDRERDRDRERDRE
SKAPNSAINVSVAPGVGMLPLKQAAIHQQINPFTNLPHTPRYYEILKKRLQLPVWEYKER
FHEILTRHQSFVLVGETGSGKTTQIPQWCVDMVRALPGPKRGVACTQPRRVAAMSVAQRV
ADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHER
TLATDILMGVLKEVVRQRADLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTP
EPERDYLEAAIRTVIQIHMCEEDEGDVXLFLTGQEEIDEACKRIKREIDDLGPEVGDIKI
IPLYSTLPPQQQQRIFEPPPPRKSSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQK
VYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRS
NLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEF
PLDPQLAKMVIASCEYNCSNEILSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHL
TLLNVYHAFKQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDY
YINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKN
YIRTCTDIKPEWLVKIAPQYYELGNFPQCEAKRQLERIVAKLQTKEYTQY
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgacatcgactggatttgggcgatgattactcgtcgagcaaaaagagatca
tcagacggaaaagaccgtgacagagatcgagaagaaaggtcgaaggaccgggaccgggat
cgcgacagagatcgggacagggacagggagcgagacagagacagggaacgagaccgggag
agcaaagcccccaactcagccataaacgtgagcgtggcgcctggagtagggatgctgccc
ctgaaacaagcagcaatccatcagcagatcaacccctttaccaacctaccccacacgcca
cgctactacgagatcctcaagaagcgtctgcagcttcccgtctgggagtacaaagagcgc
ttccatgagatcctcacacgccaccaaagcttcgtgctggtgggagagaccggctccggc
aagaccacacagatccctcagtggtgtgtggatatggtgcgtgctctgccggggcccaag
cgtggcgtagcctgtacccagccccgcagagtggcagccatgagtgtggcacagcgagtg
gcagacgagatggatgtcatgcttggacaggaagtcggctactctatcagattcgaagac
tgcagctcggcgaaaaccatcctcaagtacatgactgatggtatgttactccgagaggcc
atgaacgacccgctgctcgaacgatacggcgtaatcattctggacgaggctcatgaacgc
acactggccacagatattctgatgggcgttctgaaagaagtcgttcgccagagagcagac
ctaaaggttattgtcatgagtgccaccttggatgccggaaagttccaggtgtacttcgac
agctgccccttgctcactatccctggtagaacgcaccctgtagagatcttctacacacca
gagcccgagcgtgactacctggaggctgccatcaggacggtcatccagatccatatgtgc
gaggaagacgagggagacgtgnctctcttccttacaggacaagaggagatcgacgaagcc
tgcaagcggatcaaacgggaaattgacgatcttggccccgaagtaggcgacatcaaaata
atccctctgtactccacactgcccccccagcagcagcagaggatctttgagcctccacca
cctcgcaaatccagcggagccatcgggagaaaggttgtggtgtccacaaacattgccgag
acatcgcttaccatcgacggtgtggtgttcgtaatcgatcctggcttcgctaagcaaaag
gtgtataacccacgcatcagggtggagtccctgctagtgactgcgatcagtaaagcatcg
gctcagcagagggcaggaagagccgggcgtacgcgaccagggaaatgcttccgcctttac
acggagaaggcgtacaagactgaaatgcaggataacacgtacccagagattctccgatct
aacctgggctctgtagtgttacagctaaagaagctgggtatcgatgacctggtgcatttt
gacttcatggacccaccagctcctgagactctgatgcgtgctctggagctgttaaactac
ctggcagcgctgaacgatgatggagacctgaccgagctgggctccatgatggcagagttc
cctctggaccctcagctggctaagatggtcatcgccagctgcgaatacaactgctccaac
gagatcctctccatcaccgccatgttatcagtcccacagtgctttgtgcgccccaccgag
gccaagaaggcggctgacgaggccaagatgaggtttgcccacatcgacggagaccatctc
accctgctcaacgtttatcacgcctttaaacagaaccacgagtcagtgcaatggtgctat
gataactttgtgaattaccgctcgctgatgtcggcagataacgtgcggcagcagctgtcg
cgcatcatggaccgtttcaacctgccacggcgtagcaccgagttcaccagcagagattac
tacatcaacatccgccgtgcactggtcaccggcttcttcatgcaggtggcccacctggag
cgtacagggcactatttgacagtgaaggacaaccaggtggtccagctgcacccgtccacc
gtgctggaccacaagcccgaatgggtgctgtacaacgagtttgtgctgaccaccaagaac
tacatccgcacctgtacagacatcaaacctgagtggcttgtcaaaattgccccacagtac
tacgagctgggcaatttccctcagtgtgaagccaagcggcagttggagcgcatcgtcgct
aaacttcaaaccaaggaatacactcaatactaa
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